Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 85 / 3e-21 unknown protein AT3G16330 79 / 8e-19 unknown protein AT4G29110 76 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012967 [exp] 243 / 4e-84 AT1G52140 105 / 5e-29 unknown protein Lus10038274 [exp] 80 / 4e-19 AT3G16330 124 / 2e-35 unknown protein Lus10025828 [exp] 79 / 7e-19 AT1G52140 138 / 8e-41 unknown protein Lus10037566 [exp] 58 / 3e-11 AT1G52140 79 / 2e-18 unknown protein Lus10014153 [exp] 57 / 1e-10 AT4G29110 84 / 1e-20 unknown protein Lus10006040 [exp] 42 / 5e-05 AT1G52140 78 / 2e-17 unknown protein Lus10005478 [exp] 41 / 0.0001 AT1G52140 89 / 2e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086500 [exp] 124 / 2e-36 AT4G29110 139 / 3e-41 unknown protein Potri.001G188900 [exp] 84 / 1e-20 AT1G52140 127 / 2e-36 unknown protein Potri.003G049800 [exp] 70 / 2e-15 AT1G52140 129 / 1e-37 unknown protein Potri.006G236700 [exp] 64 / 4e-13 AT4G32860 94 / 4e-24 unknown protein Potri.018G046500 [exp] 53 / 5e-09 AT1G52140 94 / 1e-23 unknown protein Potri.014G139900 [exp] 39 / 0.0004 AT1G52140 87 / 3e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034944 pacid=23181334 polypeptide=Lus10034944 locus=Lus10034944.g ID=Lus10034944.BGIv1.0 annot-version=v1.0 ATGGCCTTGTCAGTAGTGTCCCCACAAGAGTACGAGTTCAGCTGCAGCAACACCCCGTCCAATAATAACCCCTTCTTCTTCCCTTTCAATAAGCGTAATA AGAACAAGTCCAGCAAGTACCACGATGACGTCACCACGGTGGCGGCGGTGCAGAGGATGCTGGAGATGCTGAACCGAAACGAGATAGAGATGCCGATTCA TTCGGCTTTTGTGTCAGCGGCGGCGTCTCCGCTGCCGGGGTTCGGGATGAGTCCGGCGATGGGGAAGCAGCTGAGGATAACGGACTCGCCGTTTCCGGTG AAGGAAGAGGACGGCAGTGGTGGGGATGGACAGGTGGATAAGGCGGCGGATGATTTCATTAAAAGGTTCTATAAGGATTTGAAATCGCAGAAAGCGGTTG TGGATCACTCTCCTTGTCATAGCTTATGGGGCCGATGA
AA sequence Show only first row Show all	>Lus10034944 pacid=23181334 polypeptide=Lus10034944 locus=Lus10034944.g ID=Lus10034944.BGIv1.0 annot-version=v1.0 MALSVVSPQEYEFSCSNTPSNNNPFFFPFNKRNKNKSSKYHDDVTTVAAVQRMLEMLNRNEIEMPIHSAFVSAAASPLPGFGMSPAMGKQLRITDSPFPV KEEDGSGGDGQVDKAADDFIKRFYKDLKSQKAVVDHSPCHSLWGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52140			unknown protein		Lus10034944 [exp]	0	1
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Lus10001665 [exp]	2.8	0.7974
AT1G29530			unknown protein		Lus10011974 [exp]	12.2	0.7404
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	14.7	0.7547
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10018674 [exp]	16.9	0.7420
AT1G65295			unknown protein		Lus10026997 [exp]	28.6	0.7239
AT5G40500			unknown protein		Lus10022273 [exp]	55.2	0.7296
AT5G40140			RING/U-box superfamily protein...		Lus10039447 [exp]	59.6	0.7001
AT4G22120			ERD (early-responsive to dehyd...		Lus10020032 [exp]	60.0	0.7226
AT2G30520		RPT2	ROOT PHOTOTROPISM 2, Phototrop...		Lus10029102 [exp]	76.2	0.6690
AT5G43830			Aluminium induced protein with...		Lus10041181 [exp]	79.0	0.7043

Compare expression of checked genes

Lus10034944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.