Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20000 745 / 0 CDC27b, HBT HOBBIT, CDC27 family protein (.1) AT3G16320 243 / 4e-71 CDC27a Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48150 92 / 3e-19 CDC23, APC8 anaphase-promoting complex subunit 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012968 [exp] 1036 / 0 AT2G20000 1126 / 0.0 HOBBIT, CDC27 family protein (.1) Lus10042152 [exp] 84 / 9e-17 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1) Lus10004242 [exp] 84 / 1e-16 AT3G48150 895 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086300 [exp] 812 / 0 AT2G20000 1146 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.006G164000 [exp] 794 / 0 AT2G20000 1098 / 0.0 HOBBIT, CDC27 family protein (.1) Potri.012G075000 [exp] 89 / 3e-18 AT3G48150 957 / 0.0 anaphase-promoting complex subunit 8 (.1) Potri.017G065600 [exp] 59 / 1e-10 AT2G20000 74 / 2e-16 HOBBIT, CDC27 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10034945 pacid=23181420 polypeptide=Lus10034945 locus=Lus10034945.g ID=Lus10034945.BGIv1.0 annot-version=v1.0 ATGGAAGCCATACTTGTTGACTGTGTGAACAACAGTCTCCGGCATTTCATGTTCCGAAACGCCATTTTCATGTGCGAACGCCTCTGCGCTGAGTTCCCTT CCGAGATACATTTACAATTGTTAGCTGGGTGCTATCTGAAAAATAATCAAGCTTACGCTGCTTATCATATCTTGAAAGGTAAACGGGTGTCCATGGACCT CTTAAAGGAAGCAGAAGCAGCACTATGTCCTGCTAATGAGCCAGGTGGAGAGGTTCCCAATGGAGCAGCTGGGCATTACCTTCTTGGTCTCATCTACAGG TATACCGATAGAAGAAAAAGAGCTATCCACTACTTTAAGCAGGCTTTGTTGATAGATCCTCTTCTCTGGGATGCATATGAAGAACTCTGTATATTAGGTG CTGCTGAAGAAGCAACTGCAGTTTTTGGTGAAGCAGCTTCTCTAACTATTCAAAAGCAGTACTCACATTTGATAGCTACGCAGAGTCTGCAGATGACTAA CGATGATCGCACTGTAGTGTCAAGTCGGAATTCTAGCTCAGAGGATGGAAGTCCCAGGCAGCTGAAACATATGCAAGGCCCTAACCCAAGAGAACTAGCT GGAAATTACCATGTGATGTCAGCAGTAGGAGGAGCTGGCAGTCAGCTTTCTAATGGGGGTCCTCCAAACATAGGGTTTTATAGTACTCCTTCACCGATGG CACAGTTATCGGGTGTTGCACCCCCACCATTATGTAGAAACATGCAGGCTAATGGTCCTAATCTTAGTAACAACAGTGCTGATATCTCTCCAAGGCCAGC TGTGAACACCAATATTCAAGCTCCCCGAAGAAAGGTTGTTGATGAAGGGAAATTACGGAAGATATCTGGAAGGTTATTTTCTGATTCTGGCCCTCGACGT AGTTCAAGACTTGCTGCGGAGACAGCGGCCAACTCGAACACAACCACCACTGTAGTTGCGGGGAATGGTAATGGCAATTCTTCTAAGTTTCTTGGAGGTT CCAAGTTGAGTTCCATGGCAATGCGTTCTGTAACACTTCGTAAAGGACAGTCTTGGGCAAATGAAAATTATGATGAAGGACTCCGGAACGAGGCTTATGA TGATATGCGCACGAATGCTTCTACAAATCCTGGTTCATCGTCTTCTGGTGACTCTAGATCTTTCGAAGCAGATGGAGCAACTATCACTGCTGGGTCAGCT GTGATGAGTGCCTCAAAAGTTCTTAGTGGAGCTTCCGAAATATTGAATCTCTTAAAAAGCTACGGCGATGGATACAGGCTCTCTTGTTTACATAGGTGCC AGGATGCACTGGATGCCTACTTGAAACTACCCCACAAGCACTACAACACCAGCTGGGTGCTTTCTCAGGTCGGAAAAGCATATTTTGAATTGGTGGATTA TTTGGAAGCTGATCAGGCCTTCAGTCTTGCCCGGCGAGCATCACCCTACAGCTTGGAAGGGTTGGATATATATTCTACTGTTCTATATCATTTGAAGGAA GACATGAAGTTAAGTTACCTTGCCCAAGAACTGATATCAACTGATCGCTTAGCACCCCAATCTTGGTGTGCCATGGGAAATTGCTATAGTTTACAGAAAG ACCATGAAACTGCCTTGAAGAATTTTCAGCGAGCTGCACAACTTAGTTCACGATTTGCTTACGCACATACACTTTGTGGGCATGAATACGTAGCTTTGGA GGATTATGAAAATGGAATCAGTGTGGTGAGATGGGAATCTATGTTTATCGGAGTGCCTGAAGAATTGACGCCAGACATTATAATGCGTGGTATGGACTTG GGATGGTCTACTTGA
AA sequence Show only first row Show all	>Lus10034945 pacid=23181420 polypeptide=Lus10034945 locus=Lus10034945.g ID=Lus10034945.BGIv1.0 annot-version=v1.0 MEAILVDCVNNSLRHFMFRNAIFMCERLCAEFPSEIHLQLLAGCYLKNNQAYAAYHILKGKRVSMDLLKEAEAALCPANEPGGEVPNGAAGHYLLGLIYR YTDRRKRAIHYFKQALLIDPLLWDAYEELCILGAAEEATAVFGEAASLTIQKQYSHLIATQSLQMTNDDRTVVSSRNSSSEDGSPRQLKHMQGPNPRELA GNYHVMSAVGGAGSQLSNGGPPNIGFYSTPSPMAQLSGVAPPPLCRNMQANGPNLSNNSADISPRPAVNTNIQAPRRKVVDEGKLRKISGRLFSDSGPRR SSRLAAETAANSNTTTTVVAGNGNGNSSKFLGGSKLSSMAMRSVTLRKGQSWANENYDEGLRNEAYDDMRTNASTNPGSSSSGDSRSFEADGATITAGSA VMSASKVLSGASEILNLLKSYGDGYRLSCLHRCQDALDAYLKLPHKHYNTSWVLSQVGKAYFELVDYLEADQAFSLARRASPYSLEGLDIYSTVLYHLKE DMKLSYLAQELISTDRLAPQSWCAMGNCYSLQKDHETALKNFQRAAQLSSRFAYAHTLCGHEYVALEDYENGISVVRWESMFIGVPEELTPDIIMRGMDL GWST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Lus10034945 [exp]	0	1
AT4G19610			nucleotide binding;nucleic aci...		Lus10040636 [exp]	2.0	0.9380
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	2.8	0.9408
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10038248 [exp]	4.0	0.9325
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	4.5	0.9484
AT1G50140			P-loop containing nucleoside t...		Lus10013429 [exp]	5.5	0.9295
AT3G55160			unknown protein		Lus10007252 [exp]	5.9	0.9375
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Lus10026261 [exp]	6.9	0.9267
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003354 [exp]	6.9	0.9371
AT5G47690			binding (.1.2.3)		Lus10038777 [exp]	7.1	0.9394
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10041483 [exp]	9.3	0.9087

Compare expression of checked genes

Lus10034945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.