Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20010 1169 / 0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) AT2G25800 1120 / 0 Protein of unknown function (DUF810) (.1) AT2G33420 638 / 0 Protein of unknown function (DUF810) (.1) AT1G04470 607 / 0 Protein of unknown function (DUF810) (.1) AT5G06970 412 / 5e-127 Protein of unknown function (DUF810) (.1) AT4G11670 254 / 3e-70 Protein of unknown function (DUF810) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012970 [exp] 791 / 0 AT2G20010 568 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Lus10012969 [exp] 768 / 0 AT2G25800 545 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008431 [exp] 710 / 0 AT2G25800 860 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013391 [exp] 625 / 0 AT2G25800 756 / 0.0 Protein of unknown function (DUF810) (.1) Lus10023742 [exp] 608 / 0 AT2G33420 1426 / 0.0 Protein of unknown function (DUF810) (.1) Lus10011785 [exp] 568 / 0 AT2G33420 1256 / 0.0 Protein of unknown function (DUF810) (.1) Lus10008430 [exp] 440 / 3e-145 AT2G25800 587 / 0.0 Protein of unknown function (DUF810) (.1) Lus10013392 [exp] 439 / 1e-144 AT2G25800 589 / 0.0 Protein of unknown function (DUF810) (.1) Lus10026160 [exp] 405 / 2e-124 AT5G06970 1507 / 0.0 Protein of unknown function (DUF810) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085900 [exp] 1246 / 0 AT2G20010 1166 / 0.0 Protein of unknown function (DUF810) (.1), Protein of unknown function (DUF810) (.2) Potri.006G238200 [exp] 1174 / 0 AT2G25800 1446 / 0.0 Protein of unknown function (DUF810) (.1) Potri.018G044200 [exp] 1170 / 0 AT2G25800 1442 / 0.0 Protein of unknown function (DUF810) (.1) Potri.008G170200 [exp] 635 / 0 AT2G33420 1382 / 0.0 Protein of unknown function (DUF810) (.1) Potri.010G068000 [exp] 616 / 0 AT2G33420 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G030100 [exp] 385 / 7e-117 AT5G06970 1437 / 0.0 Protein of unknown function (DUF810) (.1) Potri.001G108400 [exp] 323 / 7e-94 AT4G11670 1097 / 0.0 Protein of unknown function (DUF810) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05664 [flax] [poplar] UNC_13_homolog Unc-13 homolog
Representative CDS sequence Show only first row Show all	>Lus10034947 pacid=23181418 polypeptide=Lus10034947 locus=Lus10034947.g ID=Lus10034947.BGIv1.0 annot-version=v1.0 ATGTCTCGCGTTCCTGGTGGAGACATCACCAGGAAGTCCACCTCCACGCGCCACCGTGCTCAACCAGTCTCTGCCGCGGTCTCCACCGCCACTGGGACCA CCACAGCTATGACCATTTACCCAGTTGATCAATTGGGTTCCCCCTTTGGCAATGAAGCTTCCTCCCCTCTCCACTTATCCGCCTCGGAGCTCCGGGACTC CGCTTACGAGATCCTAATCGCAGCTTGTCGGAGCTCCGGGACCCGCCCACTAACATACACCCCTCAGTCGGAGAGAACTGCTGCTGCTGCTTCTGCTAAT AATACTTCGACTCTGGCGCATTCCCCATCGCTACAGAGGTCGTTGACCTCGTCGGCGGCGAGTAAGGTCAAGAAGGCGCTCGGGATGAAATCGGGCTCTT CCAAGAGGAGAGCCGCCGCCCGAGATGATGAATCGGCAGGTCAGGATAGAACAAAAAAAGTTGCGACGGTCGGCGAGTTGGTTAGAGTCCAGATGAGAGT TTCTGAGCAGGCTGATTCCAGGATCCGACGAGCTCTCTTGCGAGTCGCTGCTGGCCAGCTAGGAAGGCGCATAGAGTCCATGGTTTTGCCACTTGAGTTG TTGCAACAGCTTAAGTCATCTGATTTCTCTAACCAGCAAGATTACGAGGCTTGGCAGAAGAGAATTTTGAAGCTTTTAGAAGCTGGACTATTAATCTATC CTCGCATACCGCTCGATAAATCCGACACTGCTGCAAGACGGTTTCAGCAAGTTATCCGTGGGGCATTGAACAAGCCCCTTGAAACTGGTAGGAACACCGA GTCGATGCAGGTTCTGCGGAATGTAGTTATGTCTTTGGCTTGTCGATCATCGAATGGATCTGCTGCCGAAACTTGCCACTGGGCAGATGGGTTTCCTTTG AATCTGCGACTTTATCAAACGCTACTGGAGACATGCTTTGATGTTAGTGATGAATCAGTTGTTATTGATGAAGTGGATGAAGTTATAGAACTTATAAAGA AGACCTGGGCGATTCTCGGAGTGAACCAGACATTGCATAACGTCTGTTTTTTGTGGGTTTTGTTCCATCGTTATGTTTTGACCGGTCAAATTGAAGATGA CCTTTTGTTTGCTGCCAATAGTTTGATCATAGAGGTGGAGAAAGACGCCAAGGCTACTAAGGATCCGGAATACTCAAAGATCTTGAGTTCCACGTTGACT TCTATACTAGAGTGGGCAGAGAAAAGGCTTATTGCTTACCATGATAGTTTTAATAGTGATAATACTGAATCAATGGAATGCGTTGCTTCTCTGGCTGTTT TGGCAGCAAAAGTACTTGTAGAAGACATCTCTAATGAGTACCGCAAGAGGAAACAAGTTGATGTTGCTTGTGAGAGGACTGATACCTATATCCGATCTTC GATTCGTGCTGCTTTTGGCCAGGCACGTTTCAGTCCTCTTCCTCAACTCGCTATGCTTGCACAAGACATTAGCCAACTGGCTTTTAGTGAGAAGGCTATA TTCAGTCCTATATTCAAGAGATGGCACCCTCATGCTGCAGGTGTAGCAGTAGCTACACTTCATTCATCTTATGGAAAAGAGCTGAATCGATTTATATCGA GCGTCAGTGAGTTGACCCCTGATGCCATACAAGTCCTGTCGGCCGCTGACAAATTGGAAAAGGATCTTGTCCAGATTGCAGTTGAAGACGCGGTTGATAG CGAAGATGGTGGGAAATCAATAATCCAACAGATGCCTCCTTATGAGGCTGAAGCTGCAATAGCCAATCTTGTGAAGTCGTGGATAGAAACCAGAGTTGAC CGGCTAAAAGAATGGGTTGATAGGAATCTCCAGCAGGAGGTCTGGAATCCAAGAGCGAATAAGGAAAGATTTGCACCATCTGCAGTTGAAGTCTTGAGAA CTGTAGATGAAACTCTGGAAGCATTCTTCCTCCTACCAATTCCTATGCATTCAGTCTTACTTCCTGAGCTGGTAGCAGGTCTTGATAGATGTCTCCAGAA TTACATATTCAAGGCAAAATCTGGTTGTGGCAGTCGAAACACTTACATCCCTTCTTTACCAGCATTAACCAGATGCTCAACAGGATCCAAATTCCATGTC TTCAAGAAGAAGGAGAAATCACAAATGAACCAGAGGCGGAAGTCACAGATCGATACTATCAGTGGTGAAGACTCGTATGGAATACCTCAGCTTTGCGTAC GCTTAAATACTTACCATCATATTAGAACACAGTTGGAGGTTTTAGAGAAGAGGACAGCCATTCAGCTGAGGAACTGTAAACCTAGTGATGTGGATGAGGA TACTTTAAATAAGTTTGAGGTATCAGCTACTGCTTGTATGGAAGGCGTTCAACAACTCTGCGAGGCAATGGCATACAAGGTGGTTTTCCAGGATCTGAGC CCATGTATGTGGGATGGCCTCTATGTGGGAGATGTTTCATCTTCTAGAATTGACACTTTTCTGGAGGAGCTTGAGCAATATCTGGAAGTAATATCGTCTA TGGTGCATGATCGAGTTAGGACACGCGCCATCAGTGATGTGATGAGAGCATGTCTTGATGGCTTTCTGCTGGTACTGCTTGCTGGAGGTACTTCTCGTTC TTTCTCGTTGCAAGATTACGTTGTAATCGAGGAGGACTATAAGTTGCTAAGGGATCTTTTCTGGTCGAATGGAGATGGATTGCCGGTGGAGTTGATGGAT AAGTATGCAGGGAGGGTTAAAAGCATACTCCCGTTGTATCGAATGGATACTGAAACCCTGGTGGAAAGGTTGAAAAGTAGTGTGGTTAAAGAGACATATG GTTCAGCTACCAAATCAAAGGTTCCAGTGCCACCAACTACAGGTCAATGGAGCCCTAGTGATCCTAACACTCTGTTGAGAGTGTTGTGCTATAGAAATGA CGAGACAGCAACGAAATTCCTGAAGAAGATGTACAATCTGCCAAAGAAAGTTTAG
AA sequence Show only first row Show all	>Lus10034947 pacid=23181418 polypeptide=Lus10034947 locus=Lus10034947.g ID=Lus10034947.BGIv1.0 annot-version=v1.0 MSRVPGGDITRKSTSTRHRAQPVSAAVSTATGTTTAMTIYPVDQLGSPFGNEASSPLHLSASELRDSAYEILIAACRSSGTRPLTYTPQSERTAAAASAN NTSTLAHSPSLQRSLTSSAASKVKKALGMKSGSSKRRAAARDDESAGQDRTKKVATVGELVRVQMRVSEQADSRIRRALLRVAAGQLGRRIESMVLPLEL LQQLKSSDFSNQQDYEAWQKRILKLLEAGLLIYPRIPLDKSDTAARRFQQVIRGALNKPLETGRNTESMQVLRNVVMSLACRSSNGSAAETCHWADGFPL NLRLYQTLLETCFDVSDESVVIDEVDEVIELIKKTWAILGVNQTLHNVCFLWVLFHRYVLTGQIEDDLLFAANSLIIEVEKDAKATKDPEYSKILSSTLT SILEWAEKRLIAYHDSFNSDNTESMECVASLAVLAAKVLVEDISNEYRKRKQVDVACERTDTYIRSSIRAAFGQARFSPLPQLAMLAQDISQLAFSEKAI FSPIFKRWHPHAAGVAVATLHSSYGKELNRFISSVSELTPDAIQVLSAADKLEKDLVQIAVEDAVDSEDGGKSIIQQMPPYEAEAAIANLVKSWIETRVD RLKEWVDRNLQQEVWNPRANKERFAPSAVEVLRTVDETLEAFFLLPIPMHSVLLPELVAGLDRCLQNYIFKAKSGCGSRNTYIPSLPALTRCSTGSKFHV FKKKEKSQMNQRRKSQIDTISGEDSYGIPQLCVRLNTYHHIRTQLEVLEKRTAIQLRNCKPSDVDEDTLNKFEVSATACMEGVQQLCEAMAYKVVFQDLS PCMWDGLYVGDVSSSRIDTFLEELEQYLEVISSMVHDRVRTRAISDVMRACLDGFLLVLLAGGTSRSFSLQDYVVIEEDYKLLRDLFWSNGDGLPVELMD KYAGRVKSILPLYRMDTETLVERLKSSVVKETYGSATKSKVPVPPTTGQWSPSDPNTLLRVLCYRNDETATKFLKKMYNLPKKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20010			Protein of unknown function (D...		Lus10034947 [exp]	0	1
AT2G25800			Protein of unknown function (D...		Lus10012969 [exp]	2.0	0.8538
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	2.8	0.8566
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	3.5	0.8514
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	6.3	0.8403
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10016740 [exp]	8.1	0.8113
AT3G16270			ENTH/VHS family protein (.1)		Lus10038289 [exp]	9.5	0.7990
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	10.2	0.8419
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10024653 [exp]	10.7	0.8380
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	11.0	0.8125
AT2G46520			cellular apoptosis susceptibil...		Lus10026635 [exp]	11.8	0.7918

Compare expression of checked genes

Lus10034947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.