Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09950 208 / 2e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 205 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 201 / 1e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G04780 200 / 4e-59 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 201 / 8e-59 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 202 / 1e-58 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G02750 201 / 2e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 197 / 3e-57 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 196 / 8e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40410 192 / 3e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012971 [exp] 388 / 1e-130 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10020588 [exp] 203 / 1e-63 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 205 / 4e-63 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10039388 [exp] 206 / 2e-61 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 209 / 9e-61 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034715 [exp] 205 / 1e-60 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006628 [exp] 199 / 1e-60 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10011323 [exp] 203 / 5e-60 AT5G52630 790 / 0.0 mitochondrial RNAediting factor 1 (.1) Lus10031994 [exp] 204 / 2e-59 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085800 [exp] 293 / 7e-94 AT4G02750 491 / 3e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G137200 [exp] 216 / 1e-64 AT3G14330 787 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 211 / 4e-63 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 208 / 8e-62 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G005400 [exp] 207 / 3e-61 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 207 / 8e-61 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G098800 [exp] 206 / 2e-60 AT1G71420 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 206 / 7e-60 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G006400 [exp] 203 / 9e-60 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 204 / 1e-59 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10034948 pacid=23181364 polypeptide=Lus10034948 locus=Lus10034948.g ID=Lus10034948.BGIv1.0 annot-version=v1.0 ATGAAAGCCAATAGAGCGACGCTCCGCCAAGCAATAGACTCACTTTACACCATCGGCCCAGCGACTCAAGAGTCCTATACTCGCCTTGTCCTTGAATGCT TTCGCGCCAACGATGCTGATCAAGCCAAGCGATTGCAGTCCCACATGGACTCATACTCCTACCGCCCAACCGATTCCTTCCTGCAGAATCGCTTCCTCCA TCTTTACGCCAAATCCGGGCAGGTTTCCACTGCCCGACAACTGTTCGATAAAATGCCCCACCGAGACATTTTCTCCTGGAATGCTATGCTCTCTCTGTAT GCAAAATCCGGGTCCGTTGAGGATTTGCAAGGCGTTTTCGACAGGATGCCTTTCCATGATTCCGTTTCTTATAATACTGTGATTTCTGGTTTGACTGGAG GTGGTTGTCCAAGCAAGGCGCTTTCCAAAAATGACATCAAGTATGGGGAGATGGCTGCTAGGAAACTATTCGAACTGGATCCTCTAAATGCCGGTCCTTA TGTCTTGCTGTCCAATATTTATGCCGCTCGTGGAATATGGAAAGAAGTTGCAGCTCTGCGATGCTTGATGAAGGCCAACAATGTGAAGAAATTTGCAGCG TACAGTTGGATTGACATCAACAACAAAGTCCCCAAATTCGTAGCAGATGATCGGAGTCATGTCGATTCAAAAGCTATATATGAGGAACTGAACAATTTGA TAAAGAAGCTTCAGGAGTTTGGGTATAAGCCTAATACAGGCTTGGTTTTACATGACGTTGGGGAACAAGAGAAATGCGAGTCCATCAGTTATCATAGTGA AAAACTTGCTCTTGCATTTAGTTTGATGAAAAAGCCTAACGAAGCTATGCCGGTAAGGATATTGAAGAACATTCGTGTATGTGCCGACTGTCATATATTT ATGAAGCTTGCTTCTGAGGTCACAGGAAGGACTATCATTTTGAGGGATTCAAACAGATACCATCATTTCTTCGGAGGGAAATGCTCTTGCAAGGATCAGT GGTGA
AA sequence Show only first row Show all	>Lus10034948 pacid=23181364 polypeptide=Lus10034948 locus=Lus10034948.g ID=Lus10034948.BGIv1.0 annot-version=v1.0 MKANRATLRQAIDSLYTIGPATQESYTRLVLECFRANDADQAKRLQSHMDSYSYRPTDSFLQNRFLHLYAKSGQVSTARQLFDKMPHRDIFSWNAMLSLY AKSGSVEDLQGVFDRMPFHDSVSYNTVISGLTGGGCPSKALSKNDIKYGEMAARKLFELDPLNAGPYVLLSNIYAARGIWKEVAALRCLMKANNVKKFAA YSWIDINNKVPKFVADDRSHVDSKAIYEELNNLIKKLQEFGYKPNTGLVLHDVGEQEKCESISYHSEKLALAFSLMKKPNEAMPVRILKNIRVCADCHIF MKLASEVTGRTIILRDSNRYHHFFGGKCSCKDQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33170			Tetratricopeptide repeat (TPR)...		Lus10034948 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	3.5	0.8281
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	6.3	0.8254
AT1G53470		MSL4	mechanosensitive channel of sm...		Lus10013692 [exp]	10.4	0.8227
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	13.9	0.8181
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10043022 [exp]	18.3	0.8156
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	19.1	0.7856
AT5G66820			unknown protein		Lus10009344 [exp]	26.7	0.7748
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	27.4	0.7809
AT3G22420		ZIK3, WNK2, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10004904 [exp]	28.8	0.7641
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	29.8	0.7904

Compare expression of checked genes

Lus10034948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.