Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19670 658 / 0 Exostosin family protein (.1) AT4G32790 546 / 0 Exostosin family protein (.1) AT5G25820 528 / 1e-180 Exostosin family protein (.1) AT5G11610 491 / 1e-167 Exostosin family protein (.1.2) AT4G16745 473 / 1e-160 Exostosin family protein (.1.2) AT5G37000 442 / 1e-148 Exostosin family protein (.1) AT5G03795 314 / 3e-99 Exostosin family protein (.1) AT3G07620 288 / 4e-90 Exostosin family protein (.1) AT5G25310 285 / 2e-88 Exostosin family protein (.1) AT5G11130 278 / 5e-86 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012973 [exp] 1145 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 701 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 684 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 543 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 538 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 537 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 478 / 2e-162 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 462 / 1e-156 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10039142 [exp] 319 / 1e-100 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085500 [exp] 746 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 580 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 563 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 557 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 541 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 476 / 7e-162 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 330 / 2e-105 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 318 / 9e-101 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 308 / 1e-97 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 303 / 2e-95 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10034951 pacid=23181394 polypeptide=Lus10034951 locus=Lus10034951.g ID=Lus10034951.BGIv1.0 annot-version=v1.0 ATGTTCATGCAGCCGTCTCAAGTTTCAAGTGTTGACCAGTGGAATCTCAATATGGAATTCCATCTTCGACTACCCAAGTTCAATCAAATCGAGTCGAAAA AATGGCTCATCTTTTTAGTTGCAGTCGCCATTGCTCACTTATTGTTTCAACCTCTATTGTTTCCATATGGCTACAACATTCGGTCTCTCTTGCCAACTGC GAATGATTCCATGTTTGATCAAAGCGGGATGATTGCAACTGCAGCGGAGCAATCTTCAGTAAAGCCTGGTACATCTCGTAATGCTTTAGCAGTTGATGCG TCAACCTCCACTTCCAGTTTGAAGATTGATTTTATTTCGAGAAATGACAATAAATCTGATGGCGCTGGAGACAGAAGTCATGTCAGTGAAGCCAAAGGAC ATGACCAAGATACAGATGAAGAAGAAGAAGAAGACCTGGATGATGGGCCAGCTGAACTTGCCGTGGATAGAGATGTCGTTGATGATGATGAGGTTTCCCT CGAAAGTAGTTCTATTCTAGAGTTTCCAAGTGAAGCAAGAAGGGACCTTCCTCTTTATAAAAATGTGACAATTAAGAGCAGTGAAGAAGAAACAAATGTT TCAAGGGCAGTTCCTAAGAGTCCAAGTATCGTATTTGAAGCTCCACCAGTTAACTATCAAGCAGTAACTCGAACAACCATTGATGCCCCTTTGGAAGCAA ATGAAAGCTCCTCCGTATTTCCTGCAGTGGTTAAAGGTGCTTCTATTGTTTCAAGAGATAAAAATGGTAGAGTAAGTAGCCCTGTTAAGAAACAGACGAA GACTGAGATGCCACCAACAACAATTACAACGATTGACGAGATGAATGATTTGTTAGCACACCATGGTCGTTCTTCACTAACAATGAGACCGTCATCTGTA CGTGATCAGGAGATTTTAGCTGCAAGGGCACAGATTGAAAATGCACCTCTACTCGTAAATGATCAAGATCTATATGCTCCGCTCTTCCGAAATGTGTCCC AGTTCAAAAGGAGTTATGAGCTCATGGAACGCACACTCAAGGTCTACATCTATACGGATGGAAAGAAACCAATCTTCCACGTCCCAATATTAAAGGGATT GTATGCTTCAGAGGGATGGTTTATGAAACTGATGCAGGGAAGTAAGCAATTTGTTGTCAAGGATCCACAAAAGGCTCACCTGTTCTATATGCCATTCAGT TCCCGAATGCTAGAGTACAGTCTCTACGTCCGGAATTCACATAACAGAACAAATCTACGTCAGCATCTAAACGAATATACGGAAAAGATTGCTGCTAAAT ATCCTTACTGGAACCGAACCGGCGGAGCAGACCATTTTCTCGTTGCCTGCCATGATTGGGCTCCTTACGAGACTAGGCAACATATGGACCATTGCATTAA AGCTCTCTGCAATGCTGATGTGACAGTAGGTTTCAAACTCGGGACTGATGTATCTCTTGCAGAGACGTTCATCCGAGCAGCTAGAAATCCTCTCCGCGGC CTTGGAGGTAAACCACCTTCACAAAGACACATCCTTGCCTTCTATGCTGGAGGAATGCATGGATATCTTCGTCCGATTTTAGTCGAGCAATGGAAAGACA AGGAGCCGGATATGAAGATCTTTGGTCCTATGCCTGGGTCGAGTAAAATGAACTACATCCAGCACATGAAGAGCAGCAAGTATTGTATATGCCCCAAGGG GTTCGAGGTTAACAGCCCACGAGTTGTCGAATCAATCTTCTACGAATGTGTCCCTGTTATCATATCGGACAACTTTGTGCCACCGCTTTTTGAGGTCTTT GATTGGAAAGCCTTCTCGGTTATCCTCCCAGAGAAGGACATTCCCAACCTGAAGAGGATTCTGGTGTCGATACCGGAAAAGCGATACGTTGACCTGCAAC TGGCGGTCAGGAAAGTTCAAAAGCATTTCCTTTGGCATGCAAGGCCTGTGAAATTCGATCTCTTTCACATGACCCTTCATTCCATTTGGTACAATCGTGT TTATCAGATGAAACTACGATGA
AA sequence Show only first row Show all	>Lus10034951 pacid=23181394 polypeptide=Lus10034951 locus=Lus10034951.g ID=Lus10034951.BGIv1.0 annot-version=v1.0 MFMQPSQVSSVDQWNLNMEFHLRLPKFNQIESKKWLIFLVAVAIAHLLFQPLLFPYGYNIRSLLPTANDSMFDQSGMIATAAEQSSVKPGTSRNALAVDA STSTSSLKIDFISRNDNKSDGAGDRSHVSEAKGHDQDTDEEEEEDLDDGPAELAVDRDVVDDDEVSLESSSILEFPSEARRDLPLYKNVTIKSSEEETNV SRAVPKSPSIVFEAPPVNYQAVTRTTIDAPLEANESSSVFPAVVKGASIVSRDKNGRVSSPVKKQTKTEMPPTTITTIDEMNDLLAHHGRSSLTMRPSSV RDQEILAARAQIENAPLLVNDQDLYAPLFRNVSQFKRSYELMERTLKVYIYTDGKKPIFHVPILKGLYASEGWFMKLMQGSKQFVVKDPQKAHLFYMPFS SRMLEYSLYVRNSHNRTNLRQHLNEYTEKIAAKYPYWNRTGGADHFLVACHDWAPYETRQHMDHCIKALCNADVTVGFKLGTDVSLAETFIRAARNPLRG LGGKPPSQRHILAFYAGGMHGYLRPILVEQWKDKEPDMKIFGPMPGSSKMNYIQHMKSSKYCICPKGFEVNSPRVVESIFYECVPVIISDNFVPPLFEVF DWKAFSVILPEKDIPNLKRILVSIPEKRYVDLQLAVRKVQKHFLWHARPVKFDLFHMTLHSIWYNRVYQMKLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	0	1
AT5G01010			unknown protein		Lus10029706 [exp]	2.6	0.8666
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	2.8	0.8626
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	4.2	0.8237
AT3G27460		AtSGF29a	SaGa associated Factor 29 a, S...		Lus10014593 [exp]	7.5	0.7914
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	7.7	0.8043
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	7.7	0.8366
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	8.2	0.7956
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10027686 [exp]	10.2	0.7821
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	11.6	0.8371
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	13.2	0.8297

Compare expression of checked genes

Lus10034951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.