Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20020 214 / 1e-62 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 164 / 3e-45 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 125 / 6e-32 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 119 / 6e-30 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012974 [exp] 517 / 1e-180 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 251 / 2e-77 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 247 / 8e-76 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 164 / 3e-45 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 160 / 4e-43 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10019623 [exp] 121 / 6e-32 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 122 / 3e-31 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 122 / 4e-31 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 119 / 6e-30 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163100 [exp] 228 / 7e-68 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 168 / 8e-47 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 128 / 3e-33 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 127 / 3e-33 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10034952 pacid=23181376 polypeptide=Lus10034952 locus=Lus10034952.g ID=Lus10034952.BGIv1.0 annot-version=v1.0 ATGCTTGATAATATTCACTCTCACTGGAAGCGTAAGAAGGTCTGCAAGATCAAGTGCAAAGGAGTTTGTACTGTTGATATGGACAATGTCTGCCACGAAC TCGAGCAAAGGAGTGGAGGGAAGATTATTTTCAAGAAAGGAGGAGTGGTGTATCTATTCCGAGGCAGAAACTATAAGTACAAAACTCGGCCGCAGTTTCC TCTCATGTTATGGAAGCCTGTTGCACCTGTGTATCCACGGATGATCGAGCAGGCTCCAGCTGGTCTAACTCTGGATGAGGCCTCTGAAATGCGTAAGAAA GGCCGAAGCTTGATACCCATGTGCAAACTAGGGATGAACCGAAGTGATTATCGGAAAATTGGTAGCAAGTTGAAGGTTTTATTTACATCTTATATAACCA GGCTTGCCATCTCAAAAGATTTTTTCCTTTTTATTAGGGAAGTAATTGCACTGTTTTCTCAAACCTTGCAGGATCTTGTTCCATGTGTGCTGATTTCATT TGAAAATGAGCACATCTTGATGTGGAGGGGAAGGGACTGGAAGTCCTCCCTCACTAAACCGGCGAGTATTGATCAGCCCAATCAAGGTTCTTCTGTTCAA CCAGAAGACCGAAAACTTCCAGAATGGAACATGTCCTGGTTGGTGTCCGAAGAACAAGTAGGAATTACAGATACTACAGAACTTTATGTGCCATCTAATA TTGTTCCAGCTGAAGAGGACATCGACAAAACTGAAGTTGCAATCGACAGTTCCGATGTTAAATTAGTAAGCTCGGAACAAGTCGTTGCAGAGGAAACCAG CCACCGGCATCTAAGGGAACCGGTAGACTTCAGCTTGCCATGTATGCAGGGAGTTGTAAAGCTATTGAACCAAGCTTTTGAAAATGGGACTGCTACTTCA TTGGAAGGGAAGGGCTTGGATCCTGAGACCATCTATAAGAGAACAGTTGCCTTCTCCAGGTCAGCTCCTGAAAGCCCAGTGTTCCAGTATGGGAGGCCGA AGAAGGAATCGGTGGAGGGAAAGAGGAAGGAGAAGGAAATGGTGGTAGCTTCTGGGGATATAGAAGTTGCAACTCCAGTTGCTACTCCCAAGAGAGAAAG GGCTGAGAGAAGAAGTTCAAGATTTGAAAAGAAGAAAGATGAACCATTAGAGTTGGTGGGTGGAGGAGTGGTTGTTGAGAAAACCTTGGGAGTAGATGAA CTTTCCAAGCTGCTGGCATAA
AA sequence Show only first row Show all	>Lus10034952 pacid=23181376 polypeptide=Lus10034952 locus=Lus10034952.g ID=Lus10034952.BGIv1.0 annot-version=v1.0 MLDNIHSHWKRKKVCKIKCKGVCTVDMDNVCHELEQRSGGKIIFKKGGVVYLFRGRNYKYKTRPQFPLMLWKPVAPVYPRMIEQAPAGLTLDEASEMRKK GRSLIPMCKLGMNRSDYRKIGSKLKVLFTSYITRLAISKDFFLFIREVIALFSQTLQDLVPCVLISFENEHILMWRGRDWKSSLTKPASIDQPNQGSSVQ PEDRKLPEWNMSWLVSEEQVGITDTTELYVPSNIVPAEEDIDKTEVAIDSSDVKLVSSEQVVAEETSHRHLREPVDFSLPCMQGVVKLLNQAFENGTATS LEGKGLDPETIYKRTVAFSRSAPESPVFQYGRPKKESVEGKRKEKEMVVASGDIEVATPVATPKRERAERRSSRFEKKKDEPLELVGGGVVVEKTLGVDE LSKLLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	0	1
AT1G26930			Galactose oxidase/kelch repeat...		Lus10024239 [exp]	1.0	0.9145
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	1.7	0.8768
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	2.4	0.8778
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	2.4	0.8600
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	3.7	0.8360
AT4G34180			Cyclase family protein (.1)		Lus10031454 [exp]	4.2	0.8225
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	5.7	0.8696
AT3G07190			B-cell receptor-associated pro...		Lus10025914 [exp]	6.3	0.8574
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	7.5	0.7947
AT2G39260			binding;RNA binding (.1)		Lus10030801 [exp]	7.9	0.8580

Compare expression of checked genes

Lus10034952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.