Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036046 [exp] 206 / 2e-64 AT1G33811 188 / 1e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023062 [exp] 149 / 2e-43 AT4G02210 67 / 4e-12 unknown protein Lus10032996 [exp] 127 / 2e-35 AT4G02210 49 / 2e-06 unknown protein Lus10011599 [exp] 91 / 2e-23 AT4G02210 54 / 1e-09 unknown protein Lus10018740 [exp] 91 / 2e-23 AT4G02210 58 / 5e-11 unknown protein Lus10032874 [exp] 80 / 2e-17 AT5G27260 53 / 1e-07 unknown protein Lus10010798 [exp] 80 / 4e-17 AT5G27260 61 / 5e-10 unknown protein Lus10032816 [exp] 76 / 7e-17 AT2G24960 57 / 1e-09 unknown protein Lus10004397 [exp] 72 / 1e-14 AT5G27260 77 / 6e-16 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034954 pacid=23181437 polypeptide=Lus10034954 locus=Lus10034954.g ID=Lus10034954.BGIv1.0 annot-version=v1.0 ATGCAGGATGTGATGGATGAAGGTCCCAGCTTGGGTGGTGCAAGTGGAGCTGGTGATGGGGGTGATGATGAACGTTGTCCCGAGAAGGAACAAAGGCAAT GGTGGGATACACACCTAGTTGTGAGTGGTCGAAGCCGGAAGAGAATTCTTTTTTCCGAAATTCTCCACAATCTGCAGTCAACCGTTCAACTCCAGAAAGG GGTAATGGTTGGTCCTAGCTTCTCTCAGCTTGCAGCTCAACTGAAGGAGCTGCAGCCATCATGTAAGCACGATGCTCTCACGGTGAAGACGAAGTTCAGA TGGTACACGTACAAGTTCAATGCACAGTTGGATCTAATGAACTCATCAGGCATGGGTTGGAACAACGCACAAGGTTGCTGTGAATGTGACTCTGGGACAT GGAGGTTGTGGAGTTACCCATTTGCAGCAGGGTTGCATCACACCAAGCTGAAATGGTGGGATGAACTATGTAAGATCTTTGAGTCTAGCTGTGCTAATGG GACGGAATTTATGACTGCAACTGAAATTGCAACAGCTCTAGAAGCTGAACTGAATGCAGGTTCCAGTGAGCCACAATCTGGGAATGATAACCACGCAGCT AAGAAGACTATGATAATGAAAGATTTCATCAATGCTGGGTTCGATATACATGCAGAGGGACTTAGGGACGTGGAGAGGAGACGGTGA
AA sequence Show only first row Show all	>Lus10034954 pacid=23181437 polypeptide=Lus10034954 locus=Lus10034954.g ID=Lus10034954.BGIv1.0 annot-version=v1.0 MQDVMDEGPSLGGASGAGDGGDDERCPEKEQRQWWDTHLVVSGRSRKRILFSEILHNLQSTVQLQKGVMVGPSFSQLAAQLKELQPSCKHDALTVKTKFR WYTYKFNAQLDLMNSSGMGWNNAQGCCECDSGTWRLWSYPFAAGLHHTKLKWWDELCKIFESSCANGTEFMTATEIATALEAELNAGSSEPQSGNDNHAA KKTMIMKDFINAGFDIHAEGLRDVERRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034954 [exp]	0	1
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	5.7	0.8715
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	6.9	0.8648
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	8.5	0.8648
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	9.8	0.8648
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	11.0	0.8648
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	12.0	0.8648
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	14.5	0.8626
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	15.0	0.8495
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	15.8	0.8494
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	21.7	0.8514

Compare expression of checked genes

Lus10034954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.