Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20050 1472 / 0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT3G06270 385 / 1e-124 Protein phosphatase 2C family protein (.1) AT1G45160 135 / 5e-32 Protein kinase superfamily protein (.1.2) AT3G23310 131 / 1e-31 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G08720 130 / 1e-31 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 130 / 1e-31 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT2G20470 131 / 2e-31 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 129 / 1e-30 Protein kinase family protein (.1) AT5G01700 123 / 2e-30 Protein phosphatase 2C family protein (.1.2) AT4G14350 127 / 3e-30 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012976 [exp] 1714 / 0 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10041242 [exp] 403 / 7e-130 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 384 / 5e-123 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 378 / 1e-120 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 342 / 2e-107 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10011814 [exp] 132 / 5e-32 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10021176 [exp] 132 / 5e-32 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10025213 [exp] 132 / 4e-31 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10031332 [exp] 128 / 1e-29 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084900 [exp] 1618 / 0 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.010G028300 [exp] 409 / 1e-132 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.008G198700 [exp] 400 / 2e-129 AT3G06270 481 / 1e-170 Protein phosphatase 2C family protein (.1) Potri.006G109600 [exp] 133 / 9e-33 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.008G167800 [exp] 134 / 1e-32 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G263000 [exp] 136 / 2e-32 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G070600 [exp] 133 / 3e-32 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 133 / 4e-32 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G146900 [exp] 130 / 4e-31 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.016G138400 [exp] 129 / 4e-31 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0029 [flax] [poplar] Cupin PF00027 [flax] [poplar] cNMP_binding Cyclic nucleotide-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034955 pacid=23181363 polypeptide=Lus10034955 locus=Lus10034955.g ID=Lus10034955.BGIv1.0 annot-version=v1.0 ATGGGCTGCGTCTACTCCCGTGCTTGTATCGGCGAGGTTTTCACTCCCAGGCTCAAACACCACCCGCCAGTCTCTTCTTTACCTCCTCCTCCTCCCCCTC CGCAGCCAGAGCAGCGTCTGAGCGATGCCCTCCCAGTCTTCTCTCCCGGCTCATCCTCCCCAGAATCTGAGCTCGGAGATCAAATCCTCAACCTCCCTGA TCCTGAACTCGGGATTACCAGGTTATCTAGAGTTTCCTCCCAGTTCCTCCCTCCCGATGGATCCAGAACCGTGAAAGTCGGCTCCGAAGGCTACGAGCTC AAGTACTCATACTTGTCTCAGCGGGGATACTATCCCGATGCGCTGGATAAGGCCAATCAGGATAGTTTCTGTATCCACACGCCGTTTGGCACTGGCGTTG ATGATAACTTCTTCGGTGTCTTTGACGGTCACGGGGAGCTCGGAGCGCAGTGCTCGCAATTCGTCAAGAAGAAGCTGTGCGAGAATCTGCTCCGGAGCGG CAAGTTCCGCGTGGATGCCGTTGAAGCTTGCCATTCGGCGTTTCTAGCCACGAATTCGCAGCTGCACGCTGAGAGCTTGGATGACAGCATGAGCGGAACG ACGGCGATTACGGTTTTGGTGCGGGGTAGGACGATATATGTGGCGAATACTGGCGATTCAAGGGCGGTGATAGCTGAGAAGAAAGGGAAGGAACTCGTGG CTGTCGATTTGTCGATAGATCAGACTCCGTTTCGAGCTGATGAACTCGAGCGAGTCAAGCTCTGTGGAGCTTGGGTGATGACATTGGATCAGATTGAAGG GCTTAAGAATCCCGAGGTCCAGTGTTGGGGAACTGAGGAAGCTGATGATGGTGATCCCCCCAGGCTGTTGGTTCCCAATGGAATGTATCCTGGTACTGCA TTTACCAGAAGTATTGGTGATTCCATTGCTGAGACGATTGGGGTTGTTGCGAATCCGGAAATTGTAGTTCTGGAGCTCTCAGCTGAAAATCCTTTCTTTG TGCTTGCTAGTGATGGTGTTTTTGAGTTCCTCTCAAGTCAGGCTGTGGTTGACATGGTTGCAAAATATAAAGATCCTCGGGATGCTTGTGCTGCAATTGT TGCAGAATCTTATCGCCTTTGGCTACAATACGAAACTCGCACAGATGATATTACTATAATAGTAGTACATATTAATGGTCTGACTCATAATTCGGTTGAT CCCTTAACAACTTCATTTGGAGCGCAGCATGCTGTCCCTCATGTTGTGGAGGTGACAGGAGCTGAATCTCCGTCAACCTTTGGATGGAATTCTAAAAACC AACGTGTAAGGCATGATTTATCTCGAGCGCGTATTCGTGCCATTGAAAGTTCACTTGATAACGGCCAAGGCTGGGTTCCTCCTTCTCCAGCGCACAGGAA AACCTGGGAAGAAGAAGCACAAATAGAGAGGGCACTGCGTCAGCATTTCCTTTTCAGAAAGCTTACTGATTCTCAGTGTCAAGTTTTATTGGACTGCATG CAAAAAGTTGAGGTCCAACCAGGGGAGATTGTAGTTAAGCAGGGTGGTGAAGGTGATTGCTTTTATATCGTCGGCAGTGGGGACTTTGAGGTTTTTGCTA CCCAGGAAGAGAAAGACGGAGAGGTGCCAAAGGTTTTGCAGCACTACACTGCTGAGAAGTTATCATCATTCGGAGAGCTTGCGTTAATGTACAATAAGCC ACTTCAGGCTTCCGTCCGAGCTGTGACGAGTGGGACGTTATGGGCACTGAAAAGAGAGGATTTTCGTGGTATCCTGATGTCAGAGTTTTCTAATTTGTCA TCCTTGAAGCTACTTCGTTCTGTAGATCTTCTGTCAAGATTAACTATCTTGCAGCTGAGTCAGATAGCGGATTCGCTTTGTGAAGTATCATTCTCTGATG GACAGATTATAGTCAACGAGAGCGAGGGGATCTCTGCTTTGTGTGTCATACAGAAAGGAAGAGTGCGGCTTACTTTTCAAAGTGACTTGTTGAATTGCTC AAACGTTCGCAGTCTGAAGTCTGACAGTGGGACAGAGGATATTGATATGCAAAGTGGTAAAATGGTCTCAATGGAGAAAACAGAAGGAAGCTATTTTGGA GAATGGACACTAATTGATGAAGAGATCGGTAGTGTGAGTGCAGTTGCTGTGGGTGATTGTGTTTGTTCTGTGTTAAGCAAGGAGAACTTTGTTTCAGTAG TTGGTCCTTTAGCAAAACTTTTGCAGGATTGTGCCAAGTCAAGTGGCTCTTCTTCTGATGTTCTTACGGAATCTGCTGAAAGTACTGGTATTCCTGCTTC TCCTAGCGTTCAAATATCTCAACTGGAGTGGAAGAGATGCTTGTACACCACTGACTGCTGTGAAATTGGGCTTGTGCAACTGAGAGACTCAGGACAATTG CTCAGTCTGAAAAGGTTTTCCAAACATAAGATCAAGAAACTGGGAACGGAAGTACAAGTTTTGAATGAGAAAAATCTAATGAAGAGTATGCTTCCTTCAG CATTTGTTCCACGGATTTTAAGTACATGTGCAGATAGAGAACATGCAGCCATAGTATTAAATGCATACCTCGCTTGTCCTTTATCATCCATACTTCACAC GGCACTTGATGAACCTTGTGCGCGATTTTGTGGTGCCTCAGTCGTAGTTGCTTTAGAGGATCTACATAAGGACGGAATAATCTACAGAGGAGTGTCCCCA AATGCCTTGATGTTGGATCACACAGGATATCTGCAGTTAGTAGACTTCAGATTTGGAAAGAAGCTGTCTGGTGAGAGGACATTTACAATATGCGGAACGG CAGACTCATTAGCTCCAGAGATTATTAACGGAGAAGGGCATGGTTTCCCCGCTGACTGGTGGGCTCTTGGGGTGTTGATCTATTTCATGCTACAGGGAGA AATGCCGTTCGGGTGTTGGAGAGAGAGTGAAGTTGACAGTTGCACAAAGATTGCAAAAGGACAACTCACTCTTCCTTCAACTCTCAGCCCTGAAGCAGCA GATCTTATCTCTAAGTTACTTGAAGTTGAAGAGAACAAGAGACTTGGCAGCCTAGATCCCGATTCCATAAAAGCTCATCCATGGTTTAGTGGTGTAGACT GGGAAGGAATCAGGGAAAAGAGCCTTGTGGTTCCAGATGAAATAGCTTCTCGAGTCGCACACCATGTTCAAACCTGCTCTGAGCAAGATTACGATGATGC TGCTGCTGCTCCTCCTTCGTCGCCTTGTCGAGATGTGGAAGATCTCAATGTTCCAGAATGGCTGGATGATTGGTAG
AA sequence Show only first row Show all	>Lus10034955 pacid=23181363 polypeptide=Lus10034955 locus=Lus10034955.g ID=Lus10034955.BGIv1.0 annot-version=v1.0 MGCVYSRACIGEVFTPRLKHHPPVSSLPPPPPPPQPEQRLSDALPVFSPGSSSPESELGDQILNLPDPELGITRLSRVSSQFLPPDGSRTVKVGSEGYEL KYSYLSQRGYYPDALDKANQDSFCIHTPFGTGVDDNFFGVFDGHGELGAQCSQFVKKKLCENLLRSGKFRVDAVEACHSAFLATNSQLHAESLDDSMSGT TAITVLVRGRTIYVANTGDSRAVIAEKKGKELVAVDLSIDQTPFRADELERVKLCGAWVMTLDQIEGLKNPEVQCWGTEEADDGDPPRLLVPNGMYPGTA FTRSIGDSIAETIGVVANPEIVVLELSAENPFFVLASDGVFEFLSSQAVVDMVAKYKDPRDACAAIVAESYRLWLQYETRTDDITIIVVHINGLTHNSVD PLTTSFGAQHAVPHVVEVTGAESPSTFGWNSKNQRVRHDLSRARIRAIESSLDNGQGWVPPSPAHRKTWEEEAQIERALRQHFLFRKLTDSQCQVLLDCM QKVEVQPGEIVVKQGGEGDCFYIVGSGDFEVFATQEEKDGEVPKVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILMSEFSNLS SLKLLRSVDLLSRLTILQLSQIADSLCEVSFSDGQIIVNESEGISALCVIQKGRVRLTFQSDLLNCSNVRSLKSDSGTEDIDMQSGKMVSMEKTEGSYFG EWTLIDEEIGSVSAVAVGDCVCSVLSKENFVSVVGPLAKLLQDCAKSSGSSSDVLTESAESTGIPASPSVQISQLEWKRCLYTTDCCEIGLVQLRDSGQL LSLKRFSKHKIKKLGTEVQVLNEKNLMKSMLPSAFVPRILSTCADREHAAIVLNAYLACPLSSILHTALDEPCARFCGASVVVALEDLHKDGIIYRGVSP NALMLDHTGYLQLVDFRFGKKLSGERTFTICGTADSLAPEIINGEGHGFPADWWALGVLIYFMLQGEMPFGCWRESEVDSCTKIAKGQLTLPSTLSPEAA DLISKLLEVEENKRLGSLDPDSIKAHPWFSGVDWEGIREKSLVVPDEIASRVAHHVQTCSEQDYDDAAAAPPSSPCRDVEDLNVPEWLDDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	0	1
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	1.0	0.9365
AT2G20050			protein serine/threonine phosp...		Lus10012976 [exp]	1.4	0.9007
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10022263 [exp]	2.4	0.8690
AT1G65070			DNA mismatch repair protein Mu...		Lus10018187 [exp]	7.5	0.8435
AT3G21480			BRCT domain-containing DNA rep...		Lus10037907 [exp]	9.2	0.8625
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	9.8	0.8306
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10015118 [exp]	10.1	0.8373
AT1G65070			DNA mismatch repair protein Mu...		Lus10025647 [exp]	10.4	0.8483
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10038491 [exp]	10.7	0.8606
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	11.1	0.8234

Compare expression of checked genes

Lus10034955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.