Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28850 160 / 3e-48 ATXTH26, XTH26, XTR18 xyloglucan endotransglucosylase/hydrolase 26 (.1) AT2G14620 125 / 1e-34 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT4G37800 121 / 3e-33 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT3G23730 120 / 9e-33 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 117 / 1e-31 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT5G48070 117 / 1e-31 XTH20, ATXTH20 xyloglucan endotransglucosylase/hydrolase 20 (.1) AT4G30290 115 / 4e-31 XTH19, ATXTH19 xyloglucan endotransglucosylase/hydrolase 19 (.1) AT4G03210 115 / 4e-31 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT4G25810 115 / 4e-31 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57560 114 / 9e-31 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012978 [exp] 264 / 1e-88 AT4G28850 359 / 3e-125 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10011112 [exp] 234 / 3e-77 AT4G28850 365 / 1e-127 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10043232 [exp] 232 / 6e-76 AT4G28850 241 / 3e-78 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10035654 [exp] 132 / 2e-37 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1) Lus10010938 [exp] 128 / 7e-36 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010939 [exp] 127 / 9e-36 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 127 / 2e-35 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10011597 [exp] 125 / 9e-35 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10031392 [exp] 124 / 2e-34 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084300 [exp] 212 / 2e-68 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.006G160700 [exp] 209 / 2e-67 AT4G28850 390 / 9e-138 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.002G060500 [exp] 130 / 7e-37 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 129 / 2e-36 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.009G083800 [exp] 127 / 1e-35 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.018G094900 [exp] 126 / 3e-35 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G201200 [exp] 124 / 3e-34 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G095200 [exp] 123 / 5e-34 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G201250 [exp] 123 / 6e-34 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G094800 [exp] 122 / 9e-34 AT4G25810 413 / 1e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10034957 pacid=23181404 polypeptide=Lus10034957 locus=Lus10034957.g ID=Lus10034957.BGIv1.0 annot-version=v1.0 ATGAGTGCTAGCCACCTTCGACGATCCAGTTCTATACTCGACAAAGAATGGACGATGAAGACCCAACTCTTACGAGTGATGACCCAGCTCCGACGAGCCA ACTACCCACCTCCGATGATCCAGTTATCTGCTCGACGAAGAATCAACTATGAAGACCCAGCTCTTATGATTGACGATTCAGATCGGACGAAGCGACTATT ACCCTCATCCGACGAGGCGACGACCCAGTTTCTGATTGAACGAAGGCGAGATCGACGACCAGAGACTGGGTTGTATGTGGACAGTGTGCCGATCAGGGTT TACTGCAACTACGAGAGTGAAGGGATCCCTTACCCAAACAAACAAGGGATGCGAGCTTACTCCAGCTTCTGGAATGCTGATAACTGGGCAACTCGAGGAG GATTGGATAAGATTGACTGGACCTCCGCTCCCTTCATAGCTAGGTACTGCAACTTCGATGCACGGGCCTGCAAGTGGAATGGTCCTGCCAGCATCGACCA ATGTGCTCTCGATACCCCAGTTAACTGGTGGACATCTCCTGAGCACAAACAGCTGAGCTATGCTAAGCAAGGGCAGATGAAATGGGCAACAGACAGTTGC ATGATCTATGACTACTGCACCGATTGCGAGAGATTCAACGGCAACATGCCACCTGAATGCTTCAAGCCACAATACTAA
AA sequence Show only first row Show all	>Lus10034957 pacid=23181404 polypeptide=Lus10034957 locus=Lus10034957.g ID=Lus10034957.BGIv1.0 annot-version=v1.0 MSASHLRRSSSILDKEWTMKTQLLRVMTQLRRANYPPPMIQLSARRRINYEDPALMIDDSDRTKRLLPSSDEATTQFLIERRRDRRPETGLYVDSVPIRV YCNYESEGIPYPNKQGMRAYSSFWNADNWATRGGLDKIDWTSAPFIARYCNFDARACKWNGPASIDQCALDTPVNWWTSPEHKQLSYAKQGQMKWATDSC MIYDYCTDCERFNGNMPPECFKPQY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	1.0	1.0000
AT1G70780			unknown protein		Lus10039287 [exp]	2.0	1.0000
					Lus10027606 [exp]	3.0	0.9842
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	3.5	0.9713
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	3.7	0.9067
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	3.9	0.9279
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	4.2	0.9262
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	4.9	0.8337
AT5G24130			unknown protein		Lus10001061 [exp]	4.9	0.8848
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	5.2	0.8552

Compare expression of checked genes

Lus10034957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.