Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67290 620 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT5G19580 617 / 0 glyoxal oxidase-related protein (.1) AT1G75620 426 / 2e-142 glyoxal oxidase-related protein (.1) AT1G19900 397 / 2e-131 glyoxal oxidase-related protein (.1) AT1G14430 384 / 4e-126 glyoxal oxidase-related protein (.1) AT3G57620 369 / 1e-120 glyoxal oxidase-related protein (.1) AT3G53950 355 / 2e-115 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043230 [exp] 954 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 889 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 813 / 0 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043231 [exp] 799 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 770 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 744 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 736 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012980 [exp] 425 / 6e-147 AT1G67290 232 / 5e-73 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 434 / 2e-145 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 738 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 738 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 438 / 2e-147 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 426 / 1e-142 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 420 / 3e-140 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 397 / 3e-131 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 397 / 4e-131 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 394 / 4e-130 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 373 / 8e-122 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 369 / 6e-121 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10034959 pacid=23181427 polypeptide=Lus10034959 locus=Lus10034959.g ID=Lus10034959.BGIv1.0 annot-version=v1.0 ATGGCGAACGTCTTATTCTTCATCTTGCTCCCGATCCTCTTCTCATCATCATGCTTGGCCCATTTCCACATGCCGAGCGATTTTCGTCTGATGAACCGAG AGCACATTCTCGGTCCACACGAGCAGTTCGGTAACCCGTTCGGAAACCCAAACGATTTCAAGAGCCGAAAGATCCCCAACGACGTGGGAACTCCGATGGA CGTGGAACTCAAACAGGTGGAGGAGATCACCAAGAAAGAGAAAGTGCATCCGGCCAACGACGACGCAGTGCTGCAGCCCGCGGATGTTGGAACGGGGGTT GATAAAAGCGGTAAAATCGAGCTGCCGTTTACGAATCCGAGTGGGTATAATGGGCAATGGGAGCTTTTTTCCAAGAACTCTGGAGTGTCGGCTATGCATT CCATATTGCTTCCTCATGTCGAGAAGGTCATCATGTACGATGCCACGATTTGGAGGATTTCGAATATCATGTTGCCCCAGGGGGTTTGTCGTGTTCTTGA TGCGAAAACCGGGGAGAAGGATTGCTATGCTCATTCTGTTTTGTTTGATCCTAATGTCGACAACATTACCCCCCTCGAGCTGAATACGGATACATGGTGC TCATCCGGTGGGCTAACATTTGAAGGAAACTTTGTGAGCACTGGTGGTTTCCAAGGAGGAGCAAATACGGTTAGGTATTTGGATTCAGCCCCAGGAAGCA AATGGAGAGAATATCCAACTGCACTTGCTGCTCCTAGATGGTACTCAACCCAAGCACAATTAGCAGATGGGAGGTTCATCGTGGTCGGAGGCAGAGACGC ACAGAGCTTCGAGTACATTCCACCGGAAGGCCAACGGAACGCACAACCATTCTTCTTCGACTTCCTTAAACAAACTCTCGACCCTGAAGAAAACAATCTC TACCCATTCGTATTCCTCTCCACCGACTCCAACGTCTTCATCTTCGCCAACAACAGATCCGTCCTCTTAAACCCCAACACCAACACCGTCGTCAAGGAAT TCCCAATCCTCCCCGGCGGCCACCGTAACTACCCAGCCAGCGGCATGTCCGTCATCCTTCCCATCCGCCTCCACTCCCAAGGCCTAGAGCCCCCCATCAT CCCCGCCGAGGTCCTCGTTTGCGGCGGGTCCGCACACATCGACTCTTACAGCAAAGCCGAAAAGGGAACCTTCTACGAATGCTTGGAAGATTGCGGTAGG ATCCGAATCACCGACCCCAACCCGGTCTGGAAGCGCGAGCTTATGCCCTCCGCCAGAATCATGGGCGATATGATGCTACTCCCTTCGGGAGAAGTCCTCA TCATTAACGGAGCCAAGAGAGGGGCTTCCGGTTGGGGGTTCGCAAGGGAAACTAATTTGACGCCGTTAATTTACACCCCCAAGGCCAAATTGGGGATGAG GTTCCGTGAATTGCCCCCCTCCGAAATCCCTAGAATGTACCATTCCTCTTCCGTCGTTCTTCCCGACGGCAGGGTCTTGATTGCCGGAAGCAACACGAAT AACGGCTACATCTACGAAAAGGCCATGTTCCCGACGGAATTGAGGGTTGAGAAATTCTCCCCGCCTTACCTGGACCCGGCGCTGGCGGACAAGAAGCCTG AGATCTTGAACGGAGCTGCGATTGCGCAGTTTGGGTACAAAGGCAAGATTACGATTCAGGTGAAGGTCCCCGCGGGACCGGATATGCAGAACATTATGAA GGTTACGATGGGTGTACCTGGATTTAGCACTCACGGCGTGACGATGAATCAGAGACTGATAATGCTGGGATTGGATGCGGTGAATCCCACACCTGGGCAG CCTGGGGTTTTCGACGTCGTCGCCGGAACTCCGCCATACAGTGCGGTGGCGCCCACCGGGTATTATATGCTCAGCGTCGTTTATCAAGGGATTCCCAGTA AAACCGTCTGGGTACAGTTGAAGTAA
AA sequence Show only first row Show all	>Lus10034959 pacid=23181427 polypeptide=Lus10034959 locus=Lus10034959.g ID=Lus10034959.BGIv1.0 annot-version=v1.0 MANVLFFILLPILFSSSCLAHFHMPSDFRLMNREHILGPHEQFGNPFGNPNDFKSRKIPNDVGTPMDVELKQVEEITKKEKVHPANDDAVLQPADVGTGV DKSGKIELPFTNPSGYNGQWELFSKNSGVSAMHSILLPHVEKVIMYDATIWRISNIMLPQGVCRVLDAKTGEKDCYAHSVLFDPNVDNITPLELNTDTWC SSGGLTFEGNFVSTGGFQGGANTVRYLDSAPGSKWREYPTALAAPRWYSTQAQLADGRFIVVGGRDAQSFEYIPPEGQRNAQPFFFDFLKQTLDPEENNL YPFVFLSTDSNVFIFANNRSVLLNPNTNTVVKEFPILPGGHRNYPASGMSVILPIRLHSQGLEPPIIPAEVLVCGGSAHIDSYSKAEKGTFYECLEDCGR IRITDPNPVWKRELMPSARIMGDMMLLPSGEVLIINGAKRGASGWGFARETNLTPLIYTPKAKLGMRFRELPPSEIPRMYHSSSVVLPDGRVLIAGSNTN NGYIYEKAMFPTELRVEKFSPPYLDPALADKKPEILNGAAIAQFGYKGKITIQVKVPAGPDMQNIMKVTMGVPGFSTHGVTMNQRLIMLGLDAVNPTPGQ PGVFDVVAGTPPYSAVAPTGYYMLSVVYQGIPSKTVWVQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005879 [exp]	2.6	0.8706
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	5.5	0.8396
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012980 [exp]	5.8	0.8573
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	6.2	0.7753
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10012981 [exp]	6.5	0.8539
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	9.4	0.8505
AT3G09950			unknown protein		Lus10038794 [exp]	13.7	0.8021
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	15.7	0.8091
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	18.7	0.8177
AT5G51160			Ankyrin repeat family protein ...		Lus10029008 [exp]	19.0	0.8181

Compare expression of checked genes

Lus10034959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.