Plant FIBer expression Database

Lus10034960 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20080 46 / 2e-06 unknown protein
AT4G28840 43 / 2e-05 TIE1 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012982
[exp]
72 / 8e-16 AT2G20080 117 / 5e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G084100
[exp]
57 / 4e-10 AT4G28840 108 / 1e-29 unknown protein
Potri.006G161100
[exp]
54 / 2e-09 AT2G20080 102 / 2e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10034960 pacid=23181366 polypeptide=Lus10034960 locus=Lus10034960.g ID=Lus10034960.BGIv1.0 annot-version=v1.0
ATGGGTAGCAGTTATTTTGGAGAACCAAAGAGCTTGATGGGTGGTAATGAAAGGGGGGGAAGCAGTGGATCATCATCTTCATCGTCAAGGAAAGGAAAGA
AGAGTAATACTAGTGGAAATTCTTCAGAGAAACAGCCTAAGCAGCCCCAAAGAGGACTTGGAGTTGCTCAATTGGAGAAGATCAGATTAACCGGTCAACT
TGGTTATAATCACCACCACCACCACCCTTCATCCTATCACATCAACCCTAATTACCCTTCTAATCTCAACCACCAGGAGGATATTAGAGGTCAAACCGGT
TATTCATCGATACCATCTTCTTCCTTCTCTTATTCGTCATCCTCACCTATGCCTTCTTATGCCTACAATCCAAACATCATGGTAATTAATTACTTCCTTT
CACTATATTCTTCTTTCTTCAATTCGCTTCAAACATATCTACTTACTTGGGCCCATTCTATCTTTTGTTATGAACTAGTTTTTTTTATCGCACTTCGTTG
CTTATCGATTATTTAG
AA sequence
>Lus10034960 pacid=23181366 polypeptide=Lus10034960 locus=Lus10034960.g ID=Lus10034960.BGIv1.0 annot-version=v1.0
MGSSYFGEPKSLMGGNERGGSSGSSSSSSRKGKKSNTSGNSSEKQPKQPQRGLGVAQLEKIRLTGQLGYNHHHHHPSSYHINPNYPSNLNHQEDIRGQTG
YSSIPSSSFSYSSSSPMPSYAYNPNIMVINYFLSLYSSFFNSLQTYLLTWAHSIFCYELVFFIALRCLSII

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G20080 unknown protein Lus10034960
[exp]
0 1
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10034847
[exp]
6.0 0.9502
AT1G16310 Cation efflux family protein (... Lus10009598
[exp]
6.3 0.9431
AT2G14095 unknown protein Lus10001299
[exp]
6.3 0.9360
AT4G12010 Disease resistance protein (TI... Lus10008221
[exp]
6.9 0.9371
AT5G65980 Auxin efflux carrier family pr... Lus10012708
[exp]
14.1 0.9325
AT1G62560 FMOGS-OX3 ,FMO ... flavin-monooxygenase glucosino... Lus10024609
[exp]
14.7 0.9348
AT3G26170 CYP71B19 "cytochrome P450, family 71, s... Lus10018261
[exp]
14.8 0.9375
AT2G22850 bZIP ATBZIP6 basic leucine-zipper 6 (.1.2) Lus10019273
[exp]
16.9 0.9250
AT2G47730 GST6, ATGSTF5, ... Arabidopsis thaliana glutathio... Lus10030414
[exp]
18.0 0.9236
AT4G32650 AtLKT1, KAT3, A... A. thaliana low-K+-tolerant 1,... Lus10007670
[exp]
18.5 0.9174

Lus10034960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.