Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034961 pacid=23181340 polypeptide=Lus10034961 locus=Lus10034961.g ID=Lus10034961.BGIv1.0 annot-version=v1.0 ATGAAAATCAGTGGTTTGAAAAGAAGAGCTCAAACGGCTTCTCCCTCAAGGCTGATTTCTCCCTTGATCACCACTACAACAACTCCAACATTAGCTTCTC TGTCAACACAAAATGTGGCAAAATGGACTTCAACCCCTGTTCCTGCGAGATTAAAACTATTCGGCGGTGGCGGCGGATTTGAAGGAGATGGAGTCGACGG TGGCGACGATGTGGATCTAGCGGCGGCGGCAGTGGCCTTTGTGGTAGTGTGGAGTTGCAGCGGCGGCGGCGTCGAGTTGGGGGCGACGACGGAGTTGCAA CAATGGCGGCGGCGGGGGAGTAGTGGCGGAGGTCGGAGAGATTTTGGAAAAGGACAGAAGAGAGATGAAGTTGATGGTGAAGGGTTGTGTTTGGTAAAAT AA
AA sequence Show only first row Show all	>Lus10034961 pacid=23181340 polypeptide=Lus10034961 locus=Lus10034961.g ID=Lus10034961.BGIv1.0 annot-version=v1.0 MKISGLKRRAQTASPSRLISPLITTTTTPTLASLSTQNVAKWTSTPVPARLKLFGGGGGFEGDGVDGGDDVDLAAAAVAFVVVWSCSGGGVELGATTELQ QWRRRGSSGGGRRDFGKGQKRDEVDGEGLCLVK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034961 [exp]	0	1
					Lus10009357 [exp]	1.0	0.9062
AT5G44440			FAD-binding Berberine family p...		Lus10003646 [exp]	3.7	0.8203
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	3.9	0.8488
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10039900 [exp]	4.9	0.8214
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10025832 [exp]	5.1	0.8598
					Lus10025700 [exp]	5.7	0.8420
AT1G74090		SOT18, ATSOT18,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10034656 [exp]	7.3	0.7440
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10019238 [exp]	8.2	0.7332
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	9.9	0.7466
					Lus10011661 [exp]	12.6	0.8170

Compare expression of checked genes

Lus10034961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.