Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29080 270 / 8e-90 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT2G22670 230 / 4e-74 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT5G65670 226 / 2e-72 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT3G04730 212 / 4e-68 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G14550 202 / 4e-64 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 202 / 4e-64 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 192 / 3e-60 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 151 / 5e-45 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT1G04240 151 / 7e-45 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 136 / 2e-39 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012984 [exp] 474 / 8e-170 AT4G29080 280 / 8e-94 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10028222 [exp] 238 / 1e-77 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 239 / 7e-77 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2) Lus10019241 [exp] 234 / 2e-75 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10011583 [exp] 222 / 4e-71 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10039414 [exp] 213 / 7e-68 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10015907 [exp] 200 / 6e-63 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10006585 [exp] 166 / 1e-49 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10014731 [exp] 164 / 7e-49 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G161400 [exp] 291 / 5e-98 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.003G051300 [exp] 270 / 5e-89 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 263 / 2e-86 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 254 / 1e-82 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.013G041400 [exp] 219 / 1e-70 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 217 / 1e-69 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G053900 [exp] 208 / 2e-66 AT3G04730 317 / 3e-110 indoleacetic acid-induced protein 16 (.1) Potri.010G078300 [exp] 207 / 1e-65 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 201 / 6e-64 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 198 / 1e-62 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Lus10034962 pacid=23181378 polypeptide=Lus10034962 locus=Lus10034962.g ID=Lus10034962.BGIv1.0 annot-version=v1.0 ATGGACAACAAAGCTCCCGACTCACCACCAAATCCTACCATCTCCAACACACCTGTTTCCGGCCTCTCCTTGAACTTGAAAGCTACCGAGTTGAGGCTCG GCTTACCCGGCTCCCAGTCCCCCGACAGGGATAACAACCTAGTCAACCCACAACTCTGCATCGGCTTCCCCAATAAAACAGGGGCCAAGAGAGGCTTCTC CGTCGCCATTCACGGCGTCTCCTCCTCCTCCGCCAACTGGGTTTTCTCCGGATCTGATACCAATTTCTCCTCTGCCGGGAAGAATAATACTAATAAAGTG ATACCGGAGCAAGGTAATAAAACTGCTAAAGACGGGCAGCCTCCTCCTCAGCCAGATGCCCCCACGCCGGCGAAGAAGAACACTGAGGCCGCCGCTCCAG CTTCCAAGGCACAAGTAGTGGGATGGCCGCCAATTCGTTCGTACCGAAAGAACACGATGGCTTCTTCGACTCGGACTACAACAAAGAATAACAACAGTAG TAGCGAGGAGGGAGGAGTGGATGGAGATGTTCCAGCACAGTTGGGGGAATCAAAATCATCATTATCTTCAGGGTGTTTGTATGTCAAAGTAAGCATGGAT GGTGCTCCTTATCTCAGGAAAGTTGATCTCAACACTTATGGCGGCTACCAAAATCTATCCCTCGCACTGGAGAACATGTTCAGCTGCTTCACCATCGGTC AATATGGTTGTCATGGAAGAGATGGTGTAAGTGAGAGCCGACTTGTAGATATTCTACATGGTTCTGAATACGTACTTACTTACGAAGATAAAGATGGTGA CTGGATGCTTGTTGGTGATGTTCCTTGGAAGATGTTCATTGACTCTTGCAGGAGGCTGAGGATCATGAAGAGTTCAGACGCCATTGGCCTGGCGCCAAGA GCATTCCAGAAATGCAAAAGTAACAACTAG
AA sequence Show only first row Show all	>Lus10034962 pacid=23181378 polypeptide=Lus10034962 locus=Lus10034962.g ID=Lus10034962.BGIv1.0 annot-version=v1.0 MDNKAPDSPPNPTISNTPVSGLSLNLKATELRLGLPGSQSPDRDNNLVNPQLCIGFPNKTGAKRGFSVAIHGVSSSSANWVFSGSDTNFSSAGKNNTNKV IPEQGNKTAKDGQPPPQPDAPTPAKKNTEAAAPASKAQVVGWPPIRSYRKNTMASSTRTTTKNNNSSSEEGGVDGDVPAQLGESKSSLSSGCLYVKVSMD GAPYLRKVDLNTYGGYQNLSLALENMFSCFTIGQYGCHGRDGVSESRLVDILHGSEYVLTYEDKDGDWMLVGDVPWKMFIDSCRRLRIMKSSDAIGLAPR AFQKCKSNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10034962 [exp]	0	1
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	1.0	0.9709
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10033840 [exp]	1.7	0.9110
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	2.4	0.9006
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	2.4	0.9221
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	4.0	0.9013
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10005619 [exp]	4.5	0.8804
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	4.5	0.9009
AT5G41600		RTNLB4, BTI3	Reticulan like protein B4, VIR...		Lus10038833 [exp]	4.6	0.8661
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	6.6	0.8792
AT1G08315			ARM repeat superfamily protein...		Lus10039500 [exp]	6.9	0.8729

Compare expression of checked genes

Lus10034962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.