Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79750 692 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT5G11670 677 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G19900 677 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G25880 673 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G13560 340 / 7e-111 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 333 / 2e-108 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012964 [exp] 778 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10043025 [exp] 754 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10011125 [exp] 706 / 0 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10025823 [exp] 693 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 642 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10014149 [exp] 622 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 619 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005483 [exp] 573 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10006036 [exp] 509 / 3e-180 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086700 [exp] 720 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 709 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 708 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.003G049300 [exp] 687 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 685 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 338 / 1e-110 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 335 / 5e-109 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 332 / 1e-107 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 327 / 9e-106 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10034963 pacid=23181358 polypeptide=Lus10034963 locus=Lus10034963.g ID=Lus10034963.BGIv1.0 annot-version=v1.0 ATGGCTATGATGGAGCTTGAGGAGAGAAATGAAAGGCTGTTTTATAAGCTTCTAATCGACAACGTTGAGGAATTGCTGCCGGTTGTCTACACTCCCACCG TTGGGGAAGCTTGCCAGAAATATGGAAGCATATTCAAACGTCCTCAAGGTCTATACATCAGTCTCAAAGAGAATTATGGACAGGGGAGAATCCTTGATAT GTTGAAAAACTGGCCTGAGAAGAGCATTCAAATCATTGTTGTTACTGATGGTGAAAGAATTTTGGGACTCGGAGATCTTGGATGCCAGGGCATGGGTATT CCAGTTGGAAAATTGTCTCTTTACACAGCACTCGGAGGAATTCGTCCTTCTGCATTAAGCATTTTCCAGACTACGAAGCCTTCTCTTATTGACCTTAACT TATGCTTGCCTATCACCATTGATGTTGGCACAAACAATGAGAAATTGCTGAATGATGAATTCTATATTGGACTTAGGCAAAGAAGGGCCACTGGCCAGGA ATATGCTGAACTTCTGCATGAATTTATGTCAGCAGTAAAGCAGAATTACGGAGAAAAAGTTCTTATTCAGTTTGAAGATTTTGCAAACCACAATGCTTTT GAGCTCCTTGCAAAGTACGGTACAACTCATCTCGTATTCAATGATGATATACAGGGTACAGCATCTGTTGTCCTTTCAGGAGTTGTTGCAGCATTGAAGT TATTTGGTGGTTCCCTTGCCGATCACAAGTTCCTCTTCCTTGGTGCTGGAGAAGCTGGCACTGGCATAGCTGAGCTTATAGCTCTTGAGATGTCAAAACA GACAAGTACTCCTCTGCAAGAATGTCGTAAGAGGATCTACTTGGTTGACTCTAAGGGTTTAATAGTCAAGTCCCGGTTAGAGTCACTTCAACACTTCAAG AAGCCATGGGCTCATGAACATGAGCCTGTGAAGAACCTCTTGGATGCAGTCCACGCAATAAAACCAACAGTTCTAATTGGGGCATCAAGAATGGGGAAAA CATTCACAAAGGAAATCGTTGAGTCTATGTCTTCTTTCAATGAGAAACCTCTTATCATGGCTCTTTCCAACCCAACCTCGCAAGCAGAATGTACAGCCGA AGAAACATACACCTGGAGTAAGGGTAAAGCCATTTTCGCTAGTGGGAGTCCGTTCGATCAAGTAGAACACGAGGGCAAAGTTTACGTTCCTGGCCAGGGA AACAACGCATACATTTTCCCTGGATTTGGGTTGGGGGTGGTTATGTCTGGAGCTATTCGTGTTCATGACTACATGCTTCTCGCAGCTTATCTGATAAAGT ATGCTGAAAGCTGCATGTACAGCCCTCTCTACAGGAACTACCGGTGA
AA sequence Show only first row Show all	>Lus10034963 pacid=23181358 polypeptide=Lus10034963 locus=Lus10034963.g ID=Lus10034963.BGIv1.0 annot-version=v1.0 MAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKENYGQGRILDMLKNWPEKSIQIIVVTDGERILGLGDLGCQGMGI PVGKLSLYTALGGIRPSALSIFQTTKPSLIDLNLCLPITIDVGTNNEKLLNDEFYIGLRQRRATGQEYAELLHEFMSAVKQNYGEKVLIQFEDFANHNAF ELLAKYGTTHLVFNDDIQGTASVVLSGVVAALKLFGGSLADHKFLFLGAGEAGTGIAELIALEMSKQTSTPLQECRKRIYLVDSKGLIVKSRLESLQHFK KPWAHEHEPVKNLLDAVHAIKPTVLIGASRMGKTFTKEIVESMSSFNEKPLIMALSNPTSQAECTAEETYTWSKGKAIFASGSPFDQVEHEGKVYVPGQG NNAYIFPGFGLGVVMSGAIRVHDYMLLAAYLIKYAESCMYSPLYRNYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10034963 [exp]	0	1
AT2G24990			Serine/threonine-protein kinas...		Lus10032627 [exp]	2.8	0.8590
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	9.2	0.7194
AT1G09730			Cysteine proteinases superfami...		Lus10000917 [exp]	10.8	0.7850
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10043105 [exp]	12.6	0.7955
AT2G17020			F-box/RNI-like superfamily pro...		Lus10022651 [exp]	12.8	0.7537
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	14.1	0.7761
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	15.7	0.7829
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Lus10006088 [exp]	17.3	0.7676
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	20.2	0.7504
AT1G35530			DEAD/DEAH box RNA helicase fam...		Lus10006089 [exp]	23.7	0.7198

Compare expression of checked genes

Lus10034963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.