Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26080 229 / 1e-71 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT5G57050 220 / 2e-68 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT1G72770 221 / 9e-68 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 214 / 9e-65 HAB2 homology to ABI2 (.1) AT1G07430 192 / 3e-57 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 190 / 3e-57 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 189 / 2e-56 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G59220 179 / 1e-52 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G51760 169 / 1e-48 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT1G43900 122 / 2e-31 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012962 [exp] 496 / 1e-176 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10026447 [exp] 223 / 6e-68 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 223 / 1e-67 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10016493 [exp] 196 / 7e-59 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10040738 [exp] 195 / 3e-58 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10004703 [exp] 194 / 4e-58 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 186 / 6e-55 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 166 / 4e-49 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 169 / 5e-49 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164632 [exp] 333 / 1e-112 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.006G224600 [exp] 227 / 2e-69 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 224 / 2e-68 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.008G059200 [exp] 211 / 4e-65 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.003G044200 [exp] 215 / 7e-65 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.010G199600 [exp] 204 / 3e-62 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.015G018800 [exp] 202 / 5e-62 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.012G131800 [exp] 199 / 2e-60 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.015G133900 [exp] 189 / 1e-56 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.001G092100 [exp] 189 / 1e-56 AT1G07430 219 / 3e-67 highly ABA-induced PP2C gene 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10034965 pacid=23181396 polypeptide=Lus10034965 locus=Lus10034965.g ID=Lus10034965.BGIv1.0 annot-version=v1.0 ATGGACCAGTTGGACGACGATCCATACCGAAAAATCGAGCGGGACGACGACTCACTGACCGACCTGGCCTCCTCAACGAGCTCAGGCGCGTTGTCCACTC TCTGGACCGAAGATTCTCGAAGTGGTAGCGCAAGCTCCGTCGATATCTCCGTCGCCAGCGGAAGTTCAGGAGAGATTCTCACCGCCTTGGCGAGGGAGGA CTTCGATTTTGCGACGGCGCCGACAATTGATGTACGGGATAATTGCATCGGAAGAAAGAACAACCAAGCACTGAGCTGGGGATTGACATCAGTGATTGGG AGGAGGCGAGAGATGGAGGATGCTGTCACCATTGTGGCCAATTTCTGCAAGGAAAGGATCCACCACGTGATTGCAGAGGAGTGTGATCGGGCAACGGCGG GCGGTTATGAAGAATGGCAGAGGAGGTGGGAAGCTGCTCTTTCCGGCGGGTTTGAGAGGGCGGACGACGAAATAGCGGCAGAAGCAGTTGCTCCGGTGAT CTTTGGATCAACGGCTGTGGTTGTTGTGCTATCTAGCTGCCAGATTATCACATCAAACTGTGGGGATTCCCGGGCATTGCTCTGCCGTGGAACCCAAGCA ATCCCTTTGAGTGTTGATCAGAAGCCTGATAGAGAAAATGAACTCCAGAGGATTGAGGAAGCCGGAGGGAAGGTGTTTAATTGGAATGGTGCTAGAGTTC TGGGTGTCCTTGCCATGTCTAGAGCCATAGGCGACAGGTACTTGAGGCCATACGTAATCTCGGTGCCGGAGATAACATTCATGACAAGGAGCGAAGAAGA CAAATGCTTAATCGTGGCAAGCGACGGGCTGTGGGATGTGATGACAAACGACGAGGTAGGGGAAGTAGCTCGTAGGGTACTAAGAAGGCGGCGAAGATTG TCAACACCATCAAGCAATAGTAGTGAAAACATGATGTCGGCGGCGCAAGCTGTGGCTGACAATCTGACTGAGAAAGCCTACGCGAGGAACAGTTCCGATA ATATCTCCATAATCGTGGTTGATCTCAAACCCAAAAGAAGGCGGCCGGCAATTGCAGCAGGAGTGCCTGAGCCTCCAAATTAA
AA sequence Show only first row Show all	>Lus10034965 pacid=23181396 polypeptide=Lus10034965 locus=Lus10034965.g ID=Lus10034965.BGIv1.0 annot-version=v1.0 MDQLDDDPYRKIERDDDSLTDLASSTSSGALSTLWTEDSRSGSASSVDISVASGSSGEILTALAREDFDFATAPTIDVRDNCIGRKNNQALSWGLTSVIG RRREMEDAVTIVANFCKERIHHVIAEECDRATAGGYEEWQRRWEAALSGGFERADDEIAAEAVAPVIFGSTAVVVVLSSCQIITSNCGDSRALLCRGTQA IPLSVDQKPDRENELQRIEEAGGKVFNWNGARVLGVLAMSRAIGDRYLRPYVISVPEITFMTRSEEDKCLIVASDGLWDVMTNDEVGEVARRVLRRRRRL STPSSNSSENMMSAAQAVADNLTEKAYARNSSDNISIIVVDLKPKRRRPAIAAGVPEPPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10034965 [exp]	0	1
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	7.3	0.8031
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	10.5	0.7774
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	15.5	0.7102
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012445 [exp]	25.0	0.6820
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	29.3	0.7150
AT5G67290			FAD-dependent oxidoreductase f...		Lus10030334 [exp]	31.9	0.7122
AT1G02070			unknown protein		Lus10015899 [exp]	35.1	0.7111
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	38.1	0.6964
AT5G55380			MBOAT (membrane bound O-acyl t...		Lus10003655 [exp]	38.1	0.5636
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	41.4	0.7000

Compare expression of checked genes

Lus10034965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.