Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23560 557 / 0 ALF5 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) AT3G23550 533 / 0 MATE efflux family protein (.1) AT5G52450 335 / 2e-110 MATE efflux family protein (.1) AT2G34360 326 / 5e-107 MATE efflux family protein (.1) AT1G73700 321 / 3e-105 MATE efflux family protein (.1) AT1G15150 311 / 2e-101 MATE efflux family protein (.1) AT1G15170 309 / 2e-100 MATE efflux family protein (.1) AT1G15160 302 / 9e-98 MATE efflux family protein (.1) AT2G04040 299 / 1e-96 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT1G15180 298 / 2e-96 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012961 [exp] 470 / 7e-166 AT3G23560 394 / 3e-136 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Lus10019492 [exp] 328 / 1e-107 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10041994 [exp] 322 / 3e-105 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 320 / 8e-105 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 320 / 2e-104 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 312 / 1e-101 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 306 / 4e-99 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10027169 [exp] 305 / 3e-98 AT3G21690 740 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 304 / 3e-98 AT5G52450 507 / 1e-177 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G117100 [exp] 600 / 0 AT3G23560 545 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117300 [exp] 599 / 0 AT3G23560 547 / 0.0 ABERRANT LATERAL ROOT FORMATION 5, MATE efflux family protein (.1) Potri.011G117400 [exp] 556 / 0 AT3G23550 540 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 372 / 5e-125 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 335 / 2e-110 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 333 / 1e-109 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 333 / 1e-109 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.004G094900 [exp] 315 / 6e-103 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.010G116900 [exp] 312 / 1e-101 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G094800 [exp] 309 / 7e-101 AT2G04100 479 / 2e-167 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10034966 pacid=23181392 polypeptide=Lus10034966 locus=Lus10034966.g ID=Lus10034966.BGIv1.0 annot-version=v1.0 ATGGAAGAATCACTCCCCGCAAGATCATCTGATGACTCCACCACCGCCGCCCTTTTAGACGACAGCATACAGCAAGAACCGCCGAGTCGGCGGTGGCGCT GCGGATTTACTATTACTGATGTGGTGGATGTGGAAGAATCCAAAATCCAGATGTTGTTCTCGTTGCCAATGATCCTCACCAATGTTTTCTACTACCTAAT CCCACTCGTCTCCGTCATGTTCGCCGGTCACCTCGGCCAACTCCACCTTGCCGGAGCAACCCTCGGTAATTCCTGGGCCACCGTCACTGGTTTCGCTTTC ATGACGGGGCTAAGTGGATCTCTGGAAACACTATGTGGCCAAGGATTTGGGGCAAAGCTCTACAGAATGATGGGAATCCATCTCCAAGCTTCCTGCATAA TCTCCTTCCTATTCTCCCTTGCCATTTCCATTATCTGGCTATACACAGAGCCAATTTTAATCCTGTTAGGTCAAGACCCCAAAATTTCTGCAATGGCTGC TCTCTACGTGAAATGCCTTATTCCAGGAGTGTTTGCATATGGGTTCTTGCAGAACATTTTAAGGTTTCTCCAGACGCAGTCTGTAGTTATACCGCTTGTT CTCTTGTCAGCGTTGCCAGCCTGCATTCATATCGCCTTAGCTTATGCTTTGGTTTATGCAACTCCACTTGGTTTCATTGGGGCTCCATTGGCTGCTTCAC TTTCGTTGTGGGTTAGTTTCATTGCCTTGGCTATGTACGTCGGTTTCAGCAAGAGGTTCCACCAAACTTGGACTGGATGTTCACGCGAATCGTTCAATCA TGTTGTCCATTCACTCAAATTGGCTCTTCCTTCTGCTGCAATGGTATGCTTGGAATATTGGGCTTTTGAGATTTTAATTTTCTTGGCCGGGTTGATGCCA GATTCTGAAGTATCAACATCCTTACTGGCTATGTGTGTCAACACAGAAACCATAGCTTATATGCTCACATATGGTCTTAGTGCTGCAGCAAGTACAAGGG TTTCTAATGAGTTAGGAGCTGTTGTTGTGGCTCTAGCACTTGGCCGGAACATCTGGGCCGGCTTCTTCAGTCACAGCAGTGAAATAGCCATCAGATTTTC ATCCATGGTACCATTGCTTGCTATATCGATAACACTTGATTCCGTCCAAGGTGTTTTATCAGGAGTGGCAAGAGGATGCGGATGGCAACATATGGTAGTG TACGCAAACTTAGGGACATTTTTCTTCATTGGGATGCCTATTGCTTGCCTCCTTGGATTCAAGTTCAACTTATATGTCAAGGGATTATGGATTGGTTTGA TATGTGGACTTTCATGCCAAGCTAGCACTCTCATGTTTATCACATTGCGAATGAAATGGACCAAGACCAAGGATCTCACCCAAAATCACACTCTTGCTTG A
AA sequence Show only first row Show all	>Lus10034966 pacid=23181392 polypeptide=Lus10034966 locus=Lus10034966.g ID=Lus10034966.BGIv1.0 annot-version=v1.0 MEESLPARSSDDSTTAALLDDSIQQEPPSRRWRCGFTITDVVDVEESKIQMLFSLPMILTNVFYYLIPLVSVMFAGHLGQLHLAGATLGNSWATVTGFAF MTGLSGSLETLCGQGFGAKLYRMMGIHLQASCIISFLFSLAISIIWLYTEPILILLGQDPKISAMAALYVKCLIPGVFAYGFLQNILRFLQTQSVVIPLV LLSALPACIHIALAYALVYATPLGFIGAPLAASLSLWVSFIALAMYVGFSKRFHQTWTGCSRESFNHVVHSLKLALPSAAMVCLEYWAFEILIFLAGLMP DSEVSTSLLAMCVNTETIAYMLTYGLSAAASTRVSNELGAVVVALALGRNIWAGFFSHSSEIAIRFSSMVPLLAISITLDSVQGVLSGVARGCGWQHMVV YANLGTFFFIGMPIACLLGFKFNLYVKGLWIGLICGLSCQASTLMFITLRMKWTKTKDLTQNHTLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10034966 [exp]	0	1
					Lus10030669 [exp]	45.5	0.6274
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10012322 [exp]	99.4	0.6645
AT3G18150			RNI-like superfamily protein (...		Lus10042331 [exp]	124.8	0.6544
AT1G78550			2-oxoglutarate (2OG) and Fe(II...		Lus10011987 [exp]	132.6	0.6558
AT5G63010			Transducin/WD40 repeat-like su...		Lus10027338 [exp]	179.9	0.6173

Compare expression of checked genes

Lus10034966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.