Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 204 / 1e-59 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 202 / 3e-59 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28360 201 / 1e-58 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28380 197 / 2e-57 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 189 / 2e-54 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 158 / 1e-43 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 144 / 6e-39 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 139 / 6e-37 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G02530 136 / 3e-36 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G25960 136 / 3e-36 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012959 [exp] 388 / 1e-126 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 220 / 3e-65 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 220 / 4e-65 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 219 / 1e-64 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10036617 [exp] 187 / 7e-54 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10035834 [exp] 184 / 1e-52 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039533 [exp] 181 / 1e-51 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 179 / 8e-51 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 176 / 6e-50 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087100 [exp] 345 / 1e-110 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 214 / 2e-63 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 203 / 3e-59 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 189 / 2e-54 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 186 / 2e-53 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 186 / 3e-53 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 185 / 4e-53 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 172 / 1e-48 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 160 / 2e-44 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.010G003000 [exp] 140 / 1e-37 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10034967 pacid=23181377 polypeptide=Lus10034967 locus=Lus10034967.g ID=Lus10034967.BGIv1.0 annot-version=v1.0 ATGGTCATATCTCAATATGACAAGCCGCCTTATGAACGGGCTTGGACTACGCTGGTCAGATTAACCATGGTGCCACCACCACCAGCTTCATGTCTCATGT CCAAAAGCTTATACTTCGTTTATCTTGGACTGACAGACATGGTTTTGGCATTCTTGGAAGGGTACTGCTGGAGCAAAACAAGCGAGAGACAAGTAGTGAA GATAAGATACAAATATCTAGAATCCATCCTAAGGCAAGAAGTTGGATTCTTTGATTCCCAGGAAGCCACCACTTCCGAGATCATCAACAGCATCTCTAAG GACACCTCCCTTCTCCAGGAAGTCTTGAGCGAAAAGGTTCCAACGTTTGTGATGCACTCGTCGGTATTCATCTCAGGGCTAGCATTCGCTACGACCTTCT TCTGGCGACTAGCCCTGGTAGCCTTCCCGACATTGCTCCTCCTGATAATCCCGGGGATCATCTACGGGAAATACCTGATTCTGCTGTCGAGGGAGTCGAG AGATGAGTACGGGAAGGCGAACAGCATACTGGAACAGGCACTGAGCTCGATCAAGACGGTGTACTCGTTCACAGCGGAGAGGCGGATTTACGAGAGTTAT TCGAGGGTACTGGAGAGGACGAGGAAGCTCGGGATAAGGCAAGGGATAGCCAAAGGGGTGGCAGTTGGGAGCAGTGGTCTGTCGTTTGGGATATGGGCTT TCATTGCTTGGTGCGGGAGTCGTTTGGTTATGTACAAAAGGGAGAGCGGCGGGAGGATCTACGCTGCTGGCATTTCGTTCATCTTGAGTGGACTGTAA
AA sequence Show only first row Show all	>Lus10034967 pacid=23181377 polypeptide=Lus10034967 locus=Lus10034967.g ID=Lus10034967.BGIv1.0 annot-version=v1.0 MVISQYDKPPYERAWTTLVRLTMVPPPPASCLMSKSLYFVYLGLTDMVLAFLEGYCWSKTSERQVVKIRYKYLESILRQEVGFFDSQEATTSEIINSISK DTSLLQEVLSEKVPTFVMHSSVFISGLAFATTFFWRLALVAFPTLLLLIIPGIIYGKYLILLSRESRDEYGKANSILEQALSSIKTVYSFTAERRIYESY SRVLERTRKLGIRQGIAKGVAVGSSGLSFGIWAFIAWCGSRLVMYKRESGGRIYAAGISFILSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	3.9	0.9713
AT5G08110			nucleic acid binding;ATP-depen...		Lus10013505 [exp]	4.2	0.9297
AT4G23410		TET5	tetraspanin5 (.1)		Lus10036518 [exp]	4.6	0.8787
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	5.5	0.9713
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	6.7	0.9713
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	7.7	0.9713
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	8.7	0.9713
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	9.5	0.9713
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	10.2	0.9713
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013883 [exp]	10.4	0.7431

Compare expression of checked genes

Lus10034967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.