Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 125 / 2e-35 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT1G06080 122 / 5e-35 ADS1 delta 9 desaturase 1 (.1) AT3G15870 122 / 2e-34 Fatty acid desaturase family protein (.1) AT2G31360 117 / 6e-33 ADS2 16:0delta9 desaturase 2 (.1) AT1G06120 114 / 8e-32 Fatty acid desaturase family protein (.1) AT1G06100 112 / 4e-31 Fatty acid desaturase family protein (.1) AT1G06090 110 / 1e-30 Fatty acid desaturase family protein (.1) AT1G06360 104 / 2e-28 Fatty acid desaturase family protein (.1) AT1G06350 99 / 3e-26 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009470 [exp] 187 / 9e-61 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001273 [exp] 161 / 5e-49 AT3G15850 142 / 1e-38 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 157 / 2e-48 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 157 / 3e-48 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 154 / 3e-47 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10011488 [exp] 151 / 2e-45 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 146 / 6e-44 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 144 / 4e-43 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 144 / 1e-42 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151700 [exp] 144 / 6e-43 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 143 / 2e-42 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G151800 [exp] 142 / 7e-42 AT3G15850 425 / 1e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10034969 pacid=23181428 polypeptide=Lus10034969 locus=Lus10034969.g ID=Lus10034969.BGIv1.0 annot-version=v1.0 ATGGAAGGCCAATTGAGTAGTAGTTACAAATGGGGACTATGGGGCAAGATTGCAGCCGTATACATAACGGCGACGCATCTGCTTGCACTTTGCTCGCTGT TTTGCTTCAGCCGGGCTGCGTTTTGGGTTGCGATTTCGATTGGAGTCATCACGGGACTCTTCGGCATCAACCTCTCTTACCACAGGCATCTCACCCACAA GAGCTTCAAGATCCCAAAGTGGCTCGAGTACTTCTTCGCTTACCTTGGCGTTCATGCTCTTCAGGGAGATCCTATATTTTGGGTTAGCAACCACAGGTTT CATCACCAATACAGCGACACGAGAAAAGACCCACATAGCCCTAATTTAGGGTTTTGGTAG
AA sequence Show only first row Show all	>Lus10034969 pacid=23181428 polypeptide=Lus10034969 locus=Lus10034969.g ID=Lus10034969.BGIv1.0 annot-version=v1.0 MEGQLSSSYKWGLWGKIAAVYITATHLLALCSLFCFSRAAFWVAISIGVITGLFGINLSYHRHLTHKSFKIPKWLEYFFAYLGVHALQGDPIFWVSNHRF HHQYSDTRKDPHSPNLGFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10034969 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10012001 [exp]	1.0	0.8966
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006971 [exp]	1.4	0.8743
					Lus10022658 [exp]	3.7	0.7314
AT3G05060			NOP56-like pre RNA processing ...		Lus10007265 [exp]	5.5	0.7381
					Lus10010245 [exp]	6.9	0.7304
					Lus10013529 [exp]	9.2	0.7578
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	9.3	0.7625
AT5G13920			GRF zinc finger / Zinc knuckle...		Lus10020975 [exp]	13.3	0.6330
AT2G48020			Major facilitator superfamily ...		Lus10029629 [exp]	13.4	0.7088
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024903 [exp]	15.1	0.7368

Compare expression of checked genes

Lus10034969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.