Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15450 155 / 7e-45 Senescence/dehydration-associated protein-related (.1) AT3G21600 152 / 1e-43 Senescence/dehydration-associated protein-related (.1.2) AT4G35985 81 / 3e-17 Senescence/dehydration-associated protein-related (.1) AT3G51250 66 / 7e-12 Senescence/dehydration-associated protein-related (.1) AT2G17840 51 / 3e-07 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012957 [exp] 413 / 3e-146 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 174 / 6e-52 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 168 / 1e-49 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 72 / 4e-14 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 66 / 6e-12 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10028439 [exp] 66 / 7e-12 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 63 / 7e-11 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 49 / 2e-06 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 45 / 2e-05 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164748 [exp] 196 / 1e-60 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 191 / 1e-58 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.005G111600 [exp] 78 / 3e-16 AT2G17840 491 / 3e-172 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.004G174100 [exp] 70 / 2e-13 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 60 / 5e-10 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [flax] [poplar] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Lus10034970 pacid=23181350 polypeptide=Lus10034970 locus=Lus10034970.g ID=Lus10034970.BGIv1.0 annot-version=v1.0 ATGGACGAAGGGGAAACTCTCGAACTCGCTTCCGGCGGGTTTCTAATAGCTCGAGTCGTGGACAATAAGGGAGGATTCCCTATTGCTACAGTGGTTAAAG TTGGGAAAGACCTTCAGTGGCCACTGACGAGAGACAAGCCTGTCGTAAAGCTGTATTCTTTCCACTACTTGTTCTCTCTGCCCATGAGAGACGGCTGTCC GTTGAGCTACTGCCTGACGTTTTCGAAGCAGCAAGGGAAGAACTTAGCGGCGTTGGATTCCTTTCTTGACCAAAATTCGTGCTTCTCTGCCTCTGGTTAT GGTTCTGATTCGGAATTGGTTAGGAATGATGGAGGGAGACAAGAGCAGGGAATTGCGGAGGGTACTCTTCAGATTGTCAGGGGAATCTTCATGTGCAGCA ACGTTTACAGCAACTTGGTTAAGTGTGCGGAGATGATTCTGAAAGGGGGCGAAATCAACGGCTACAAAAAACCAGTAGTAGCACAAAATGGGAACATTGG AGCCAAAAAGGGGTTAAAGAGGGCTCGAGAGTTATCAAAGATGACAGAAGATGAGCAAAGCGATTTTGGAAGGAGCGAATATGATAAGATATTGGACGCA GCGGAGAAGCAAGCGCTTGCTGCCACCACTGCCGCCACGACAAGGGTGGTCAGCCAGAGGTACAGCGAAGGAGCGCCGGAGACAACTGGGGATGTGCTGG GCACTGCAGGTCACTGCGCTAACACGGCGTGGAATCTTGTTCAATTCAGGAAGGCTATCAATCCAGCTTCCTCTGTGGCCACGGGAGTTCATAGGAACAA CAACAGAAACTAG
AA sequence Show only first row Show all	>Lus10034970 pacid=23181350 polypeptide=Lus10034970 locus=Lus10034970.g ID=Lus10034970.BGIv1.0 annot-version=v1.0 MDEGETLELASGGFLIARVVDNKGGFPIATVVKVGKDLQWPLTRDKPVVKLYSFHYLFSLPMRDGCPLSYCLTFSKQQGKNLAALDSFLDQNSCFSASGY GSDSELVRNDGGRQEQGIAEGTLQIVRGIFMCSNVYSNLVKCAEMILKGGEINGYKKPVVAQNGNIGAKKGLKRARELSKMTEDEQSDFGRSEYDKILDA AEKQALAATTAATTRVVSQRYSEGAPETTGDVLGTAGHCANTAWNLVQFRKAINPASSVATGVHRNNNRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15450			Senescence/dehydration-associa...		Lus10034970 [exp]	0	1
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10029169 [exp]	2.4	0.8959
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	5.8	0.8339
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	9.2	0.8652
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	9.9	0.8374
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	11.8	0.8862
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	12.0	0.8639
AT2G45040			Matrixin family protein (.1)		Lus10007791 [exp]	17.4	0.7709
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	18.4	0.8746
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	19.5	0.8721
AT3G62930			Thioredoxin superfamily protei...		Lus10005941 [exp]	21.0	0.8096

Compare expression of checked genes

Lus10034970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.