Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23130 268 / 1e-85 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23280 268 / 1e-85 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT4G23180 268 / 2e-85 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G21390 271 / 3e-85 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 270 / 1e-84 S-locus lectin protein kinase family protein (.1) AT1G11330 268 / 3e-84 S-locus lectin protein kinase family protein (.1.2) AT4G23270 261 / 4e-83 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G11530 261 / 5e-83 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT3G16030 264 / 1e-82 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT3G45860 259 / 4e-82 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039733 [exp] 371 / 1e-123 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 365 / 1e-121 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10039731 [exp] 379 / 4e-121 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 365 / 7e-121 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018516 [exp] 360 / 8e-115 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10033743 [exp] 340 / 1e-111 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10031603 [exp] 338 / 4e-111 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033741 [exp] 337 / 2e-110 AT4G21380 576 / 0.0 receptor kinase 3 (.1) Lus10025891 [exp] 320 / 8e-104 AT4G21380 593 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G150900 [exp] 304 / 5e-98 AT4G21390 635 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G120300 [exp] 300 / 1e-96 AT4G21380 630 / 0.0 receptor kinase 3 (.1) Potri.005G014802 [exp] 278 / 2e-91 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.004G023550 [exp] 278 / 2e-89 AT4G05200 541 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.001G437950 [exp] 268 / 1e-88 AT4G21390 406 / 5e-135 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 279 / 2e-88 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 277 / 1e-87 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G027501 [exp] 273 / 1e-87 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G039100 [exp] 276 / 2e-87 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.005G014900 [exp] 276 / 3e-87 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10034971 pacid=23181336 polypeptide=Lus10034971 locus=Lus10034971.g ID=Lus10034971.BGIv1.0 annot-version=v1.0 ATGGAAGACCCAACTCTTACAGTCCGATTCTGGGGCCAGGCACATTGCTTCCTGGATCCATACGGGAGCAATTTGTGCCCTTGGATCCCCACACCACATG ATGAAGTTCTGCTTCCTGGTGATCGAGAAGTGGCCGTAAAAAGACTGTTGAAGAAATCGGGACAAGGGTTAGAGGAATTCATGAATGAGCGGAGACTCAT TGCATACCTTGTTAGGATGTTGGGATGTTGTGTGGAGAAGGATGAGAAGATACTGATATACGAGTACCTGCCTAATAGAAGCTTGGATAAGTTCCTCTTT GATGCATCTGCAAAAGTCGAGTTGGATTGGGCGACGCGAATGAAGATCATAGAAGCGATAGCTCAAGGGCTGCTGTACATCCATAAGTACTCAAGATTGA AGGTTATTCACAGAGACATGAAGGCAAGCAATGTGCTGCTGGATGCACAAATGAACCCCAGGATTTCGGACTTTGGAATGGCGAGGATCTTCCAGATCGA TCAAGGAGAAGCTAACACCAACCATATAGTGGGAACATATGGGTACATGTCTCCAGAATATGCAATCTACGGGAAGTTCTCAGAGAAATCAGACGTGTTC AGCTATGGCGTGTTGCTGTTGGACATCGTGAGCGGAAGGAGGAACACGGATTTCAATCAATCCGAAACTCCATTCTCCCTTCTTTCCTGGACATGGGAGC TATGGCAACAAGGGAAACCAGAAAAGCTAATCGATCCATCAAGAACTTGCACGGCGGTCGACGTTGAATGCCGACGGTGA
AA sequence Show only first row Show all	>Lus10034971 pacid=23181336 polypeptide=Lus10034971 locus=Lus10034971.g ID=Lus10034971.BGIv1.0 annot-version=v1.0 MEDPTLTVRFWGQAHCFLDPYGSNLCPWIPTPHDEVLLPGDREVAVKRLLKKSGQGLEEFMNERRLIAYLVRMLGCCVEKDEKILIYEYLPNRSLDKFLF DASAKVELDWATRMKIIEAIAQGLLYIHKYSRLKVIHRDMKASNVLLDAQMNPRISDFGMARIFQIDQGEANTNHIVGTYGYMSPEYAIYGKFSEKSDVF SYGVLLLDIVSGRRNTDFNQSETPFSLLSWTWELWQQGKPEKLIDPSRTCTAVDVECRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	0	1
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	3.5	0.9783
AT5G41460			Protein of unknown function (D...		Lus10018123 [exp]	10.3	0.9739
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	10.7	0.9717
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	11.0	0.9879
					Lus10026149 [exp]	16.0	0.9871
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008921 [exp]	17.0	0.9626
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10007645 [exp]	18.0	0.9542
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Lus10039904 [exp]	19.3	0.9330
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	20.0	0.9859
AT2G48030			DNAse I-like superfamily prote...		Lus10008177 [exp]	21.0	0.9149

Compare expression of checked genes

Lus10034971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.