Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60660 87 / 2e-20 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT1G26340 56 / 1e-09 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G48810 53 / 2e-08 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT2G46650 50 / 3e-07 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT2G32720 49 / 4e-07 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT5G53560 49 / 5e-07 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT1G77760 49 / 5e-06 GNR1, NIA1 nitrate reductase 1 (.1) AT1G37130 47 / 3e-05 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT2G46210 44 / 0.0002 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003216 [exp] 272 / 6e-90 AT3G58860 51 / 3e-07 F-box/RNI-like superfamily protein (.1) Lus10012954 [exp] 132 / 3e-37 AT1G60660 133 / 1e-41 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Lus10008838 [exp] 58 / 4e-10 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 57 / 1e-09 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10036973 [exp] 51 / 8e-08 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10000651 [exp] 50 / 4e-07 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10035402 [exp] 52 / 7e-07 AT1G77760 1277 / 0.0 nitrate reductase 1 (.1) Lus10032612 [exp] 49 / 9e-07 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10043137 [exp] 49 / 9e-07 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087600 [exp] 84 / 2e-19 AT1G60660 155 / 4e-50 ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) Potri.001G314200 [exp] 56 / 1e-09 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.017G054300 [exp] 56 / 3e-09 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 55 / 5e-09 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.012G024600 [exp] 54 / 1e-08 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G242500 [exp] 49 / 8e-07 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.015G007600 [exp] 48 / 1e-06 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.005G172400 [exp] 47 / 3e-05 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 46 / 3e-05 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.002G165800 [exp] 45 / 6e-05 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10034972 pacid=23181344 polypeptide=Lus10034972 locus=Lus10034972.g ID=Lus10034972.BGIv1.0 annot-version=v1.0 ATGATTATAGCAGTTGTGGTGCTGATCTTGGGAGTTCTATTGGGAGTCATCTTTCTCTTTCCGTTCAAATCTGCTGTCGCTGAAAAGGGTCGACCCAATG CCAATAAAGTTAAGGTGTTCGATGTTACCTCATACGTAGAAGAACATCCTGGGGGCGATGCTATTCTAACAAATGCTGGGGATGATTCAACCGAAGGATT TTATGGGCCGCAGCATCCTGGTGGAGCATTTCAGTTGATCGAGGACTACTGCATTGGGGAGCTAGAGACCAACACCAATGAATGGCTCTCCAAGGTGATT GGACCGGAGATTGAGACCATTGATCTCGATGTTTGGGGATTTCGCTTCCAACTCCAGCTTCCCACTGACCTCAAGAAGCTTAGGTCTGAAGACATTGCAG CTTGCCACATCCACTGGGGGACATTAGATACCCCAGCTTCAGCTGCTGCTAACACGATGTCAAGGCTCATCTCTGTATGCCCGGTTCTCGAAACGTTACA TTTAGAGTGGGATTTGGAGTGCCATCATGGTTCTCAGTATGGTCTGCATAGATGTGCTACCCACACGCTCTCCACAGTGCATGTGGATGCGCCGAACCTC GCACACCTCAGTTTCCAGTTCATTGGTGGAATTGTTGAATATAAACTCAGTAATTCTAATGATGTAATTGATTTCAAGTATCCAACCGTCGCTAGCAGAG ATCGTGATGTTCGTCAGAATATTGTTATGATGCCCATCAATGATCTCGTTCATGCAGTCCAGAACAAGCTTAAGCTACATTGCTCACGTGATCAGGGTGT CAGACTGCGGGATTTCAAAAACTTTACTCATTTGATCATCCGCCTCCGAACCAATGGATACTTCCCTTGTCATTTAATTAGGCATCTTCCTAATTTAGTA TCGATGCAAATAGTGGCAGAGGAAGGTTCATCTGGATGCGACATGAGCAACAGAAGAAGAGTTAGAAGAAGAAAGGCGATTATAAGTGATCCACCGAAAC ATGATATGCCAAGATGCTTGGAGTCGGGGCTAAAGGTAATTAAAATCATGGGTTTGAATGGATCTGATGAAGGGATTAACCTCACCCTAGCATACTTGCT GAAGAATGGGAGGTCATTGAGTGAGTTGAATCTCTTCTATTTTACAACTGATGAACCCACCACAAAGCTATGCACCTCAACTATCCAGAAAAACTTGCAG ACTCTCTCATCCAACTGTCAGGTTAAGGTGTTGTAG
AA sequence Show only first row Show all	>Lus10034972 pacid=23181344 polypeptide=Lus10034972 locus=Lus10034972.g ID=Lus10034972.BGIv1.0 annot-version=v1.0 MIIAVVVLILGVLLGVIFLFPFKSAVAEKGRPNANKVKVFDVTSYVEEHPGGDAILTNAGDDSTEGFYGPQHPGGAFQLIEDYCIGELETNTNEWLSKVI GPEIETIDLDVWGFRFQLQLPTDLKKLRSEDIAACHIHWGTLDTPASAAANTMSRLISVCPVLETLHLEWDLECHHGSQYGLHRCATHTLSTVHVDAPNL AHLSFQFIGGIVEYKLSNSNDVIDFKYPTVASRDRDVRQNIVMMPINDLVHAVQNKLKLHCSRDQGVRLRDFKNFTHLIIRLRTNGYFPCHLIRHLPNLV SMQIVAEEGSSGCDMSNRRRVRRRKAIISDPPKHDMPRCLESGLKVIKIMGLNGSDEGINLTLAYLLKNGRSLSELNLFYFTTDEPTTKLCTSTIQKNLQ TLSSNCQVKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10034972 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	8.2	0.8023
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	9.2	0.7815
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039051 [exp]	12.7	0.7498
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	13.9	0.7439
AT1G73600			S-adenosyl-L-methionine-depend...		Lus10009056 [exp]	17.1	0.7831
AT3G55080			SET domain-containing protein ...		Lus10040345 [exp]	17.6	0.7368
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	21.4	0.7341
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	23.7	0.7346
AT4G01040			Glycosyl hydrolase superfamily...		Lus10029447 [exp]	23.8	0.7724
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	27.2	0.7457

Compare expression of checked genes

Lus10034972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.