Plant FIBer expression Database

Lus10034973 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19880 863 / 0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012951
[exp]
966 / 0 AT2G19880 830 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G164864
[exp]
899 / 0 AT2G19880 855 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
Potri.018G087700
[exp]
897 / 0 AT2G19880 881 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Lus10034973 pacid=23181389 polypeptide=Lus10034973 locus=Lus10034973.g ID=Lus10034973.BGIv1.0 annot-version=v1.0
ATGGAAATTGTGGATTCGTTCCTCTTCTCTCTCTCCAAGGCCTTCTCTTCTCCTCTTGCAATTTTCATTCAGATCCAGGGATGTATGATCTGCTTAGTTC
TTGCTTTTGGATGGGTCCTTGCTGCTTATGTCAGGAATAGAGAGATTAAACGAATTAAGAATAGTGCGAGATCTGGCAACAGCTTTTCATTCCTGTGCCA
TGACATTAATGAATTGGAGCACTCTCATCAGGCCAACATGCCTAGAGTGAGCGTGGTTATGCCTTTGAAAGGATTCGGAGAACACAATCTTCACAATTGG
AGAAGCCAGATAACATCACTCTATGGAGGTCCTCTGGAATTTCTCTTTGTTGTAGAAAGCACAGAAGACCCTGCTTACCATGCCGTTTCTCGCTTGTTAT
CTGACTTCAAGGATCATGTTGAAGCCAAGGTTATTGTAGCTGGCTTGTCAACTACATGCAGTCAGAAAATTCATAACCAATTGGTTGGGGTAGAGAACAT
GCACCCAGAAACCAAATATGTACTATTCTTGGATGATGATGTCAGACTGCACCCTGGGTCAATTGGTGCACTCACTGTAGAGATGATTAAAAATCCTGAG
ATATTTATCCAAACAGGATATCCTCTTGATCTTCCTTCTGGGAGTTTGGGAAGTTACTGCATTTATGAATATCATATGCCTTGTTCCATGGGTTTTGCAA
CTGGTGGAAAGACTTTCTTCCTGTGGGGAGGGTGTATGATGATGCATGCAGATGATTTCAGGTGTGACAAGCATGGTGTGGTCTCTGGACTTCGCGATGG
TGGCTACTCGGATGATATGACCCTTGCAGCCTTAGCTGGGGCTCATAAGTTGCTAATTACATCCCCACCAGTCGCCGTCTTCCCCCATCCACTTGCTAGT
GATCTTAGCTTCTCAAGGTACTGGAATTACTTGAGGAAGCAAACATTCGTCTTGGAGTCGTACATATCAAGAGTCAACTGGATCATGAACCGAGCATTGT
TTTCCACCCACTGCTATTTGTCATGGGGGTTTGCAACACCATACTTCATGGCTGTGGTTCATGTTGCTGCCGCACTACGTATTTACGCCCAAGGGTATGC
TCGGGAGGAAACTGTGTTTGTCTCCAAAGGTTTGTTACTTGTCACCTGTCTGGCAGCGTGCACATTCATAGAACTCTTATCGATGTGGAACTTGACAAGG
ATAGAAGTTCATCTCTGCAACATGCTATCACCTGAGGCGCCCCGACTTTCTCTGGGTTCTTATAATTGGGTTCTCGTATTTGTTGCAATGGTTGTGGATA
ACTTTTTATATCCAATGTCTGCCATGCGTTCCCATTTCTCTCAATCTATCAATTGGTCTGGCATTCGTTACCACTTGAAAGATGGGAAGATACACAAGAT
TGATAGGAGTAAGGATATGGGTCCAATCTACACAGACTTGGGAGGGAAGCATTTAGGGAAGAAAGGAGCTCCTCCGAAATCATCATTCATGGGTTCATTA
GGGAGAAATTTAGCTCAATGGAGACGTCCCAAGAAATATGATGTCTAG
AA sequence
>Lus10034973 pacid=23181389 polypeptide=Lus10034973 locus=Lus10034973.g ID=Lus10034973.BGIv1.0 annot-version=v1.0
MEIVDSFLFSLSKAFSSPLAIFIQIQGCMICLVLAFGWVLAAYVRNREIKRIKNSARSGNSFSFLCHDINELEHSHQANMPRVSVVMPLKGFGEHNLHNW
RSQITSLYGGPLEFLFVVESTEDPAYHAVSRLLSDFKDHVEAKVIVAGLSTTCSQKIHNQLVGVENMHPETKYVLFLDDDVRLHPGSIGALTVEMIKNPE
IFIQTGYPLDLPSGSLGSYCIYEYHMPCSMGFATGGKTFFLWGGCMMMHADDFRCDKHGVVSGLRDGGYSDDMTLAALAGAHKLLITSPPVAVFPHPLAS
DLSFSRYWNYLRKQTFVLESYISRVNWIMNRALFSTHCYLSWGFATPYFMAVVHVAAALRIYAQGYAREETVFVSKGLLLVTCLAACTFIELLSMWNLTR
IEVHLCNMLSPEAPRLSLGSYNWVLVFVAMVVDNFLYPMSAMRSHFSQSINWSGIRYHLKDGKIHKIDRSKDMGPIYTDLGGKHLGKKGAPPKSSFMGSL
GRNLAQWRRPKKYDV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19880 Nucleotide-diphospho-sugar tra... Lus10034973
[exp]
0 1
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10032241
[exp]
2.2 0.8722
AT2G34770 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXY... Lus10023359
[exp]
4.7 0.8539
AT1G24764 ATMAP70-2 microtubule-associated protein... Lus10013238
[exp]
11.4 0.8494
AT4G12420 SKU5 Cupredoxin superfamily protein... Lus10024604
[exp]
12.2 0.8335
AT3G17430 Nucleotide-sugar transporter f... Lus10017115
[exp]
13.3 0.8091
AT1G79650 AtAO1, RAD23B, ... RADIATION SENSITIVE23B, Arabid... Lus10026110
[exp]
16.0 0.7618
Lus10033375
[exp]
16.4 0.6707
AT1G18640 PSP 3-phosphoserine phosphatase (.... Lus10017851
[exp]
17.3 0.8127
AT1G51940 protein kinase family protein ... Lus10006841
[exp]
25.1 0.8033
AT2G19880 Nucleotide-diphospho-sugar tra... Lus10012951
[exp]
25.2 0.8262

Lus10034973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.