Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29120 199 / 3e-64 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 106 / 3e-28 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 100 / 5e-26 6-phosphogluconate dehydrogenase family protein (.1) AT1G17650 65 / 7e-13 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 63 / 2e-12 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G64190 42 / 5e-05 6-phosphogluconate dehydrogenase family protein (.1) AT5G41670 42 / 8e-05 6-phosphogluconate dehydrogenase family protein (.1.2) AT3G02360 42 / 0.0001 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G18270 41 / 0.0002 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012950 [exp] 214 / 3e-70 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10001349 [exp] 144 / 7e-43 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10037629 [exp] 77 / 5e-17 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 75 / 3e-16 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10012301 [exp] 74 / 3e-16 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10034977 [exp] 57 / 9e-11 AT4G29120 232 / 2e-77 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 49 / 5e-07 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10034976 [exp] 48 / 5e-07 AT5G25930 199 / 4e-58 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10002140 [exp] 45 / 6e-06 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088000 [exp] 211 / 1e-68 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 147 / 3e-44 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G040800 [exp] 71 / 6e-15 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.001G465600 [exp] 53 / 9e-09 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.004G108880 [exp] 43 / 3e-05 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.017G106900 [exp] 42 / 5e-05 AT3G02360 918 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108920 [exp] 42 / 9e-05 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.015G037000 [exp] 39 / 0.0006 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.008G113700 [exp] 39 / 0.0008 AT3G02360 874 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034974 pacid=23181384 polypeptide=Lus10034974 locus=Lus10034974.g ID=Lus10034974.BGIv1.0 annot-version=v1.0 ATGGCAACCACCACCACCACCGCATCCGATGCCGTCATCTCCCCTTCGAACACCCGCGTGGGCTGGATCGGCACCGGAGTCATGGGCCGCTCTATGTGTT CCCACCTCATCAAAGCTGGCTACCCTCTCACAGTCTTCACCCGCACCGTTTCCAAGGCCCAACCCCTCCTCGACATCGGTGCCAAACTCGCCGATTCCCC ACTCGCCGTCGCTTCCCAATCCGACGTCGTCTTCTCCATCGTCGGCTTCCCCTCCGATGTCCGCCAGGTACTCCTTCACCCCGCCTCCGGCGCCCTCCAG GGCCTCAATCCAGGCGGGATTCTCGTCGACATGACCACATCGGAACCCTCCCTCGCCGCTGAGATCTCCGACGCTGCATCGGCCAAAAACTGCCACTCGA TCGATCCTGAACGTGGAAGTTTACTTGAGCGCAATCTCTACAGGAGCCGCTGGGTCCAAGTCGCTGGATTTGTACGCTGGTAG
AA sequence Show only first row Show all	>Lus10034974 pacid=23181384 polypeptide=Lus10034974 locus=Lus10034974.g ID=Lus10034974.BGIv1.0 annot-version=v1.0 MATTTTTASDAVISPSNTRVGWIGTGVMGRSMCSHLIKAGYPLTVFTRTVSKAQPLLDIGAKLADSPLAVASQSDVVFSIVGFPSDVRQVLLHPASGALQ GLNPGGILVDMTTSEPSLAAEISDAASAKNCHSIDPERGSLLERNLYRSRWVQVAGFVRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	0	1
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10017163 [exp]	1.0	0.9080
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	2.0	0.9042
AT1G08315			ARM repeat superfamily protein...		Lus10008655 [exp]	3.2	0.8669
AT5G44860			unknown protein		Lus10036220 [exp]	6.5	0.8651
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	7.0	0.8625
AT1G13360			unknown protein		Lus10034310 [exp]	7.1	0.8597
AT1G25400			unknown protein		Lus10041438 [exp]	7.7	0.8311
					Lus10012576 [exp]	8.2	0.8182
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10014074 [exp]	8.5	0.8746
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009925 [exp]	11.0	0.8512

Compare expression of checked genes

Lus10034974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.