Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 190 / 5e-55 Protein kinase family protein with leucine-rich repeat domain (.1) AT5G25910 186 / 4e-54 AtRLP52 receptor like protein 52 (.1) AT1G28440 139 / 2e-37 HSL1 HAESA-like 1 (.1) AT4G28490 116 / 3e-29 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73066 100 / 8e-24 Leucine-rich repeat family protein (.1) AT1G08590 100 / 9e-24 Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 100 / 9e-24 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 99 / 2e-23 AtPEPR2 PEP1 receptor 2 (.1) AT1G31420 96 / 2e-22 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G06940 95 / 5e-22 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034978 [exp] 427 / 2e-143 AT5G25930 927 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10012949 [exp] 325 / 1e-104 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 206 / 2e-60 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 194 / 3e-56 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10018636 [exp] 129 / 7e-34 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 124 / 7e-32 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 119 / 4e-30 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 103 / 8e-25 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10002293 [exp] 100 / 8e-24 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088100 [exp] 244 / 2e-74 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 243 / 4e-74 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 240 / 5e-74 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 241 / 3e-73 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 200 / 1e-58 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 197 / 2e-57 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 179 / 1e-51 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 134 / 2e-35 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 120 / 7e-31 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 118 / 6e-30 AT1G28440 1109 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10034976 pacid=23181390 polypeptide=Lus10034976 locus=Lus10034976.g ID=Lus10034976.BGIv1.0 annot-version=v1.0 ATGTGTATGCTCACCGTTTTATTTACTCTTTTCTTCTTCTGCTGCCATGGAAGTTCTCAGCTTCTTCAGGACGACCGTGGAATCCTGCTGAGAATGAAGC AACACTGGCAGAACCCACTGCCACTCTCTCACTGGTCACTGGCTCCTTCACCGGGCTCATCTCCCTGCGACTGGCCGGAAGTTAACTGCTCGGGAAACTC TGTCACGGTGCTGAATTTCAATTCTCTGAATATCCCTGGTACGGTTCCACCATTCATATGTGATCTGAAGAACCTGACTTTTCTGGATCTTTATAACAAC AGCATCGTTGGAGCATTCCCAACAGTTCTGTACAACTGTTCCAATCTTGAGTACTTAAACCTTGGCCAAAACTACTTCGTCGGTCCGATACCCGGTGATG TTGATCGTTTGGGTCGACTGAATCACCTTGATGTCTCTGGTAATAACTTCTCCAGTGACATCCCATCTGCCATTGGGAGGTTGAAGGAGTTGAAGGTTCT TTACCTTAACCAAAATCAGTTCAATGGAACTTTCCCGCAGGAAATTGGCTCATTATCTAAATTAGAAGAGTTGAAATTGGCCCACAATGGGTTTATGCCT TCGTTGCTGCATTCCAACTTTACCCAGCTGAAGAATCTCAAGGTTCTGTGGGTTAACGATGCGAATCTGATTGGGGAGATACCGGAAATGATCGGAGAGA TGGAAGCATTGGAGGGCTGGATCGGCACCGGAGTCATGGGCCGCTCTATGTGTTCCCACCTCATCAAAGCTGGCTAA
AA sequence Show only first row Show all	>Lus10034976 pacid=23181390 polypeptide=Lus10034976 locus=Lus10034976.g ID=Lus10034976.BGIv1.0 annot-version=v1.0 MCMLTVLFTLFFFCCHGSSQLLQDDRGILLRMKQHWQNPLPLSHWSLAPSPGSSPCDWPEVNCSGNSVTVLNFNSLNIPGTVPPFICDLKNLTFLDLYNN SIVGAFPTVLYNCSNLEYLNLGQNYFVGPIPGDVDRLGRLNHLDVSGNNFSSDIPSAIGRLKELKVLYLNQNQFNGTFPQEIGSLSKLEELKLAHNGFMP SLLHSNFTQLKNLKVLWVNDANLIGEIPEMIGEMEALEGWIGTGVMGRSMCSHLIKAG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25930			Protein kinase family protein ...		Lus10034976 [exp]	0	1
AT1G02360			Chitinase family protein (.1)		Lus10009968 [exp]	2.6	0.8439
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	8.4	0.8053
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006302 [exp]	13.7	0.7297
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	15.1	0.8045
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	15.2	0.7646
AT5G66740			Protein of unknown function (D...		Lus10014323 [exp]	15.9	0.7797
					Lus10039778 [exp]	22.6	0.7782
AT5G24600			Protein of unknown function, D...		Lus10005272 [exp]	25.4	0.7796
AT4G08850			Leucine-rich repeat receptor-l...		Lus10020936 [exp]	26.9	0.7061
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	31.1	0.8040

Compare expression of checked genes

Lus10034976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.