Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29120 233 / 1e-77 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 95 / 3e-24 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 93 / 1e-23 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 54 / 6e-09 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT1G17650 46 / 1e-06 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G20930 43 / 2e-05 6-phosphogluconate dehydrogenase family protein (.1) AT3G25530 42 / 4e-05 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012950 [exp] 271 / 3e-93 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10034975 [exp] 153 / 1e-49 AT4G29120 132 / 1e-39 6-phosphogluconate dehydrogenase family protein (.1) Lus10001349 [exp] 112 / 1e-30 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10015455 [exp] 112 / 3e-30 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 50 / 2e-08 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 46 / 2e-06 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10016077 [exp] 42 / 4e-05 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10012301 [exp] 39 / 0.0004 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088000 [exp] 247 / 6e-83 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 124 / 2e-35 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 48 / 3e-07 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G038450 [exp] 47 / 6e-07 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.003G040800 [exp] 47 / 7e-07 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034977 pacid=23181345 polypeptide=Lus10034977 locus=Lus10034977.g ID=Lus10034977.BGIv1.0 annot-version=v1.0 ATGGGCGCCCCAGGGAAGGGCCAATTCGCTAAACTGGCGAATCAGATCACCATAGCTTCGGCGATGGTTGGGTTGGTGGAAGGGATGATATATGCTTACA AGGCTGGCCTGAACGTGGAAGTTTACTTGAGCGCAATCTCTACAGGAGCCGCTGGGTCCAAGTCGCTGGATTTGTACGCTGGTAGGATTATGGAGAGGGA TTTCCAACCTGGGTTTTATGTGAATCATTTTGTCAAGGATTTGGGCATCTGTTTGAAAGAGTGTCAGAATATGGGACTTGTTTTGCCTGGTTTGGCTTTA GCTCAGCAGCTTTATCTGTCGCTGAAGGCTCACGGGGAAGGCAATTTGGGCACCCAGGCTTTGATTTTGGCTCTGGAGAGGCTTAACAATGTTTCCCTGG CCAACTCTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10034977 pacid=23181345 polypeptide=Lus10034977 locus=Lus10034977.g ID=Lus10034977.BGIv1.0 annot-version=v1.0 MGAPGKGQFAKLANQITIASAMVGLVEGMIYAYKAGLNVEVYLSAISTGAAGSKSLDLYAGRIMERDFQPGFYVNHFVKDLGICLKECQNMGLVLPGLAL AQQLYLSLKAHGEGNLGTQALILALERLNNVSLANSAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034977 [exp]	0	1
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	1.0	0.9255
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	2.0	0.9081
AT1G63290			Aldolase-type TIM barrel famil...		Lus10032052 [exp]	2.0	0.9138
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	2.4	0.8944
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	4.5	0.9028
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	4.6	0.9089
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10011006 [exp]	5.3	0.8903
AT3G12630		SAP5	stress associated protein 5, A...		Lus10015697 [exp]	7.9	0.8809
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	11.8	0.8674
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Lus10041838 [exp]	12.0	0.8842

Compare expression of checked genes

Lus10034977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.