Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25930 855 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G28440 583 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 548 / 4e-179 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 476 / 2e-151 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 476 / 2e-151 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 468 / 3e-148 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G09970 451 / 4e-142 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G49660 450 / 5e-142 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G48940 422 / 1e-129 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G19700 413 / 7e-128 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012949 [exp] 1605 / 0 AT5G25930 910 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10006028 [exp] 880 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 873 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10018636 [exp] 570 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 513 / 1e-165 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 506 / 8e-163 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 489 / 7e-156 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 481 / 1e-153 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10009476 [exp] 481 / 3e-153 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G088100 [exp] 1016 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088200 [exp] 1012 / 0 AT5G25930 885 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088062 [exp] 1008 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235800 [exp] 916 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 908 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088074 [exp] 786 / 0 AT5G25930 739 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.006G235500 [exp] 620 / 0 AT5G25930 744 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G049100 [exp] 600 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 574 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 546 / 9e-178 AT1G28440 1109 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10034978 pacid=23181367 polypeptide=Lus10034978 locus=Lus10034978.g ID=Lus10034978.BGIv1.0 annot-version=v1.0 ATGTGTATGCTCACCGTTTTATTTACTCTTTTCTTCTTCTGCTGCCATGGAAGTTCTCAGCTTCTTCAGGACGACCGTGGAATCCTGCTGAGAATGAAGC AACACTGGCAGAACCCACTGCCACTCTCTCACTGGTCACTGGCTCCTTCACCGGGCTCATCTCCCTGCGACTGGCCGGAAGTTAACTGCTCGGGAAACTC TGTCACGGTGCTGAATTTCAATTCTCTGAATATCCCTGGTACGGTTCCACCATTCATATGTGATCTGAAGAACCTGACTTTTCTGGATCTTTATAACAAC AGCATCGTTGGAGCATTCCCAACAGTTCTGTACAACTGTTCCAATCTTGAGTACTTAAACCTTGGCCAAAACTACTTCGTCGGTCCGATACCCGGTGATG TTGATCGTTTGGGTCGACTGAATCACCTTGATGTCTCTGGTAATAACTTCTCCAGTGACATCCCATCTGCCATTGGGAGGTTGAAGGAGTTGAAGGTTCT TTACCTTAACCAAAATCAGTTCAATGGAACTTTCCCGCAGGAAATTGGCTCATTATCTAAATTAGAAGAGTTGAAATTGGCCCACAATGGGTTTATGCCT TCGTTGCTGCATTCCAACTTTACCCAGCTGAAGAATCTCAAGGTTCTGTGGGTTAACGATGCGAATCTGATTGGGGAGATACCGGAAATGATCGGAGAGA TGGAAGCATTGGAGTATGTTGATTTATCGACGAATAACATCCATGGGACTATCCCAGCTGGATTGTTTAAGTTGAAGAAGTTGAGTTTCGTTTATTTGTA CAAGAACAAGTTATCCGGAGAGATTCCTCGAGTTGTGGAGGCTCTGGAATTGACTGACGTGGATCTTTCAGAAAACAGTTTGAGTGGTACGATTCCTGAT GACTTCGGGAAGCTAGAGAAAGCTCAGATCTTAAATCTCTTCTACAACAATTTAAGCGGCGAAATACCAGAAAGCATTAGCCGGCTTCCAAAACTGATTG AATTCAGTGTGTTCACCAATAATTTATCAGGTCCTATTCCTGCAGATTTTGGAAGATACTCAATGCTTGAAGTTTTCCAAGTTAACTCCAATTGGCTCAC AGGCGAACTTCCTGAACATCTGTGTAGCAACGGAAAGTTAGATGGAGTTTCAGCATATGATAACTTTCTCAGTGGAGAGCTACCGAAATCGTTAGGAAAT TGCAGCAGCGTGCGAATTATCCTCCTTTCGAACAACTCTTTCTCCAGAGAGGTGCCTGCTGGTTTATGGACTGGATCAAACTTGGAAACTTTGAGGATCA GCCATAATTCGCTCACAGGTGAACTTCCTGACAATGTGGCATCAAATCTTTCTCGACTAGAAATTAGCAACAACAGGTTTACTGGTACTCTCCCCAGTGG AGTGGGTAACTGGACCAATCTGGTGTTCTTCTCTGCCAGTAACAACTCCATTTCAGGATCGATCCCTCCGGGACTGACAGCTCTTCCGCTTCTTACTAAT CTGCTTCTCGAAGGAAACCAACTCACCGGAGCCCTTCCATCCAATATAATCTCTTGGCAGTCTTTATCCACTCTCAGTCTCAGAAGAAACCAACTGTCTG GAAACATTCCTCCACAGTTCGGTAACCTACCTCGCCTTTCGGAGCTAGACTTATCAGAAAACCAATTGTCTGGAACCATTCCTCCACAAATCGGCAGCTT GCCGCTAACTGTTCTGAATGTCTCTTCAAATCGTCTGACCGGAAACATTCCTGGGCAATTCGAGAACGGTGCATTTGCTGATAGCTTTTTGAACAATGCT GGCTTATGTTCAAGCAACTTCAATAGCTGCAGCAACAACCCAGGAGGACCTTCTTCTCGAAACAATGCTGATGCAACCCACATCTTGGCATTGGTATTAA GTGTTTCAGCTGTGGTCTTTGTGGTGGCTGTGATATCATCATTTCTCGTCATCAGGAAACTCAAGAATGAGAGTGTCAAGGATCCTGCATGGGAGTTCAC CTCATTCCAGAAGCTCAACTTTACTGAAGAGAAGATTCTTGCAGGGTTAACAGAAAGCAATGTGATTGGAATGGGCGGATCGGGGAAAGTGTATCGCGTT TCTGTGAACAGTACTCCAAATGCTGCAGTTGCTGTGAAGAGAATCTGGAACCACAAGGAATCAGATGATGAGAAGGAGTTCCTGGCAGAAGTCCAAACCT TGAGTGGAATCAGGCACTCCAACATAGTGAAGCTGCTTTGTTGCATCTCGAATAATGGCAATTCGAAGCTGTTGGTGTACGAGTACCTGGAAAATCGCAG CCTGGATTTGTGGTTGCATTCCAACAATATGAGCCTATCGGAGTCGAGCAAGCTGGTGGGTTTGGACTGGCCGAAACGTCTGAACATTGCTATAGGATCT GCAAAAGGTCTATCCTATATGCACCACGATTGTGTACCTCCCGTCATTCACAGAGATGTGAAATCCAGCAATATCCTCCTCGACTCTCAATTCAACGCAA AGATTGCTGATTTTGGCTTAGCCAGGATGCTGAACAGACTTGGTGAAGATGCTACACTGTCCATGGTTGCTGGCTCCTTCGGCTACATGGCTCCAGAATA CGGTAACAGTGGAAGGGTAAATGAGAAAGTTGATGTGTATAGCTTTGGAGTGGTGCTGCTAGAGCTGACGACAGGGAAAGATGCCAGCAACGGGGGAAAG AAGAAGAACACAACATGCCTAGTGGAATGGGCATGGCGACACGTCCAGAAAGGGAAGGCCATAGGTGATGCATTGGACGTGGAGGTTAACGAAGGTATTT TCTTGGAGGAGATGGTGTGTGTTTTCAAGCTTGGGATTCTATGCACCAGCAAACTCGCAGGTAGCAGGCCATCAATGAAGGAGGTTGTGCAAATATTGGA GAGATGTCGGCGGGAAGGGAGTTGGAGAAGGAAGAGTAGCAATGGAGGGAGGGTGGATGAGAGCCCTTTGCTCAGGAACTCGGATGATATTGACTGTAGT AGCTTGCCAGTATGCCGAGCTTGGATGGTGGTCATCATGCAAATAGCTGCGCCTAAGAATATGTCCTACTTGTTGGCTCATAGGAACACAACTCAGTTCC ACAGCTCCTTGGATGACCTCTAA
AA sequence Show only first row Show all	>Lus10034978 pacid=23181367 polypeptide=Lus10034978 locus=Lus10034978.g ID=Lus10034978.BGIv1.0 annot-version=v1.0 MCMLTVLFTLFFFCCHGSSQLLQDDRGILLRMKQHWQNPLPLSHWSLAPSPGSSPCDWPEVNCSGNSVTVLNFNSLNIPGTVPPFICDLKNLTFLDLYNN SIVGAFPTVLYNCSNLEYLNLGQNYFVGPIPGDVDRLGRLNHLDVSGNNFSSDIPSAIGRLKELKVLYLNQNQFNGTFPQEIGSLSKLEELKLAHNGFMP SLLHSNFTQLKNLKVLWVNDANLIGEIPEMIGEMEALEYVDLSTNNIHGTIPAGLFKLKKLSFVYLYKNKLSGEIPRVVEALELTDVDLSENSLSGTIPD DFGKLEKAQILNLFYNNLSGEIPESISRLPKLIEFSVFTNNLSGPIPADFGRYSMLEVFQVNSNWLTGELPEHLCSNGKLDGVSAYDNFLSGELPKSLGN CSSVRIILLSNNSFSREVPAGLWTGSNLETLRISHNSLTGELPDNVASNLSRLEISNNRFTGTLPSGVGNWTNLVFFSASNNSISGSIPPGLTALPLLTN LLLEGNQLTGALPSNIISWQSLSTLSLRRNQLSGNIPPQFGNLPRLSELDLSENQLSGTIPPQIGSLPLTVLNVSSNRLTGNIPGQFENGAFADSFLNNA GLCSSNFNSCSNNPGGPSSRNNADATHILALVLSVSAVVFVVAVISSFLVIRKLKNESVKDPAWEFTSFQKLNFTEEKILAGLTESNVIGMGGSGKVYRV SVNSTPNAAVAVKRIWNHKESDDEKEFLAEVQTLSGIRHSNIVKLLCCISNNGNSKLLVYEYLENRSLDLWLHSNNMSLSESSKLVGLDWPKRLNIAIGS AKGLSYMHHDCVPPVIHRDVKSSNILLDSQFNAKIADFGLARMLNRLGEDATLSMVAGSFGYMAPEYGNSGRVNEKVDVYSFGVVLLELTTGKDASNGGK KKNTTCLVEWAWRHVQKGKAIGDALDVEVNEGIFLEEMVCVFKLGILCTSKLAGSRPSMKEVVQILERCRREGSWRRKSSNGGRVDESPLLRNSDDIDCS SLPVCRAWMVVIMQIAAPKNMSYLLAHRNTTQFHSSLDDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	0	1
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10035956 [exp]	1.4	0.9456
AT5G12340			unknown protein		Lus10036031 [exp]	4.7	0.9483
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	11.5	0.9452
AT1G04700			PB1 domain-containing protein ...		Lus10003184 [exp]	18.2	0.9004
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Lus10024486 [exp]	19.0	0.9368
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	21.2	0.9396
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	22.8	0.9317
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	25.0	0.9347
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	25.4	0.9409
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	27.7	0.9384

Compare expression of checked genes

Lus10034978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.