Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008233 [exp] 127 / 2e-34 ND / Lus10013548 [exp] 109 / 2e-28 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10025569 [exp] 105 / 2e-26 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 103 / 3e-26 ND / Lus10027030 [exp] 94 / 2e-22 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10017291 [exp] 86 / 3e-19 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10007254 [exp] 71 / 5e-14 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008326 [exp] 64 / 3e-12 ND / Lus10013550 [exp] 55 / 1e-08 AT3G11910 79 / 1e-14 ubiquitin-specific protease 13 (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034979 pacid=23181343 polypeptide=Lus10034979 locus=Lus10034979.g ID=Lus10034979.BGIv1.0 annot-version=v1.0 ATGTGGATTCAAAGAAAGCTTCCAGAAGCTTTCAGAGTCAGAGCAATCATCCTGCATCTTCTTGGTGGTCAGTTGGAGGGGTTATTCAGTTTGCTAGAGG TTAATGACGTTGTAGCAGAAGAAGAAGCCGAAATTGATGGTAAGAACTTCATGAACCATAACTTGAACGTTCTGATTGCCCAAAATGATTGGTTAATGAT TAGTCTTGTTCCTGAATCAGAACACGAACAACCGATGGACATAGAAGCCTCTCCTGATTGCCGAACTTTCAGGCTAAGGTACAAACTCGACATTCTCTTC GATATGTCACTTGAGTCTCTACATCAAACCAAATCACTCAATGAAGTCGAGAACATTGCTCAGGAAATTCTTTCCCTGGCAACTGATCCTCTTCAGAAGA CCGTTCTGAAAGACTTAATCCCCCGCATGGCTGAACTTAAGGAGACCGTCCCTAGCTTGCTCTCAAATATGGAAACAAGCCTAGCTATTGAAATATCTAT GGCCCAGGATTTGGATGAGAGGTTGGCTTACAGGAAGGGGCAGCTGATATCTCTGGAGGCAGAGGTTTCTATACTTGGGGGGAAGAAGGCTCCAAGCTGG AGGCTGAAATTCAGCAATTCTCTTCCCGCAGGGCCAAAATTCTGGAACATGTAG
AA sequence Show only first row Show all	>Lus10034979 pacid=23181343 polypeptide=Lus10034979 locus=Lus10034979.g ID=Lus10034979.BGIv1.0 annot-version=v1.0 MWIQRKLPEAFRVRAIILHLLGGQLEGLFSLLEVNDVVAEEEAEIDGKNFMNHNLNVLIAQNDWLMISLVPESEHEQPMDIEASPDCRTFRLRYKLDILF DMSLESLHQTKSLNEVENIAQEILSLATDPLQKTVLKDLIPRMAELKETVPSLLSNMETSLAIEISMAQDLDERLAYRKGQLISLEAEVSILGGKKAPSW RLKFSNSLPAGPKFWNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034979 [exp]	0	1
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	1.0	0.9628
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	2.0	0.9618
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	2.2	0.9430
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	2.4	0.9556
AT5G59340	HD	WOX2	WUSCHEL related homeobox 2 (.1...		Lus10040840 [exp]	5.7	0.9119
AT5G65165		SDH2-3	succinate dehydrogenase 2-3 (....		Lus10028289 [exp]	6.0	0.9293
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	6.0	0.9426
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10034505 [exp]	6.9	0.9316
					Lus10022721 [exp]	7.4	0.9194
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	7.5	0.9470

Compare expression of checked genes

Lus10034979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.