Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29130 301 / 1e-98 GIN2, ATHXK1 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) AT2G19860 296 / 3e-98 ATHXK2 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) AT4G37840 157 / 1e-43 HKL3 hexokinase-like 3 (.1) AT1G50460 157 / 2e-43 ATHKL1, HKL1 hexokinase-like 1 (.1) AT1G47840 150 / 3e-41 HXK3 hexokinase 3 (.1) AT3G20040 145 / 4e-39 HKL2, ATHXK4 HEXOKINASE-LIKE 2, Hexokinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012946 [exp] 466 / 2e-163 AT2G19860 701 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10037588 [exp] 364 / 5e-123 AT4G29130 709 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10006843 [exp] 340 / 6e-114 AT4G29130 710 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10038287 [exp] 340 / 9e-114 AT4G29130 734 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Lus10024336 [exp] 224 / 9e-69 AT1G47840 646 / 0.0 hexokinase 3 (.1) Lus10025815 [exp] 226 / 2e-68 AT2G19860 582 / 0.0 ARABIDOPSIS THALIANA HEXOKINASE 2, hexokinase 2 (.1.2) Lus10002041 [exp] 197 / 1e-58 AT1G47840 643 / 0.0 hexokinase 3 (.1) Lus10005019 [exp] 156 / 7e-43 AT1G50460 670 / 0.0 hexokinase-like 1 (.1) Lus10019038 [exp] 154 / 2e-42 AT1G50460 636 / 0.0 hexokinase-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190400 [exp] 356 / 5e-120 AT4G29130 649 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.018G088300 [exp] 309 / 8e-102 AT4G29130 743 / 0.0 GLUCOSE INSENSITIVE 2, ARABIDOPSIS THALIANA HEXOKINASE 1, hexokinase 1 (.1) Potri.005G238600 [exp] 233 / 4e-72 AT1G47840 644 / 0.0 hexokinase 3 (.1) Potri.007G009300 [exp] 196 / 2e-58 AT4G37840 520 / 0.0 hexokinase-like 3 (.1) Potri.001G254800 [exp] 191 / 4e-56 AT1G50460 620 / 0.0 hexokinase-like 1 (.1) Potri.009G050000 [exp] 181 / 4e-52 AT1G50460 576 / 0.0 hexokinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF03727 [flax] [poplar] Hexokinase_2 Hexokinase CL0108 [flax] [poplar] Actin_ATPase PF00349 [flax] [poplar] Hexokinase_1 Hexokinase
Representative CDS sequence Show only first row Show all	>Lus10034980 pacid=23181351 polypeptide=Lus10034980 locus=Lus10034980.g ID=Lus10034980.BGIv1.0 annot-version=v1.0 ATGACCGCCGAGATGTACGCTGGACTTTTTCCGCAAAGCGTTAGCAAGCTCAAGATGCTTATTAGCTACGTTGACAATCTGCCTACCGGAGATGAGAAAG GGTTGTTCTACGCGTTGGATCTTGGTGGTACAAATTTCCGGGTGATGAGGGTGGTGTTAGGCGGACAAGAAGATCGTGTAGTCAAACAAGAATCAGTTGA AGTCTCTATTCCTCCACATGTCATGACTGGAACTTCAGATAAAGCAATGAAAAGAGTCGATCTTGACATGCGAGTGGCAGCATTGATCAATGACACGATC GGAACATTAGCTGGAGGAAGATACAATAATCGGGATGTCATTGCAGCTGTGATCTTGGGTACTGGAACAAATACAGCGTGTGTTGAACGAGCAGATACTA TTCAAAAGTGGCAAGGTCCGCGGCCGAAGTCTGGAGAAATGTCCTCACACCTTCCATTGAGAGAATTTGATAAGGCACTGGATATTGAGTCGATGAATCC TGGAGATCAGTTCTTGAAAGTTGACATCTTTCATTATTTGTTGAGAAGAAAGAGAAATCTTGCGAAGAGTTCTACTAAAGATGGCTGCAGAGCAGCCTTA TTCAGCGATGTTGTACCCCTCAAATTGAGGTCTCCGTTCGTATTGAGGACCCCGGTCATGTCAGCGATGCATCACGATACACCCTCAGATTTGAAAGTTG TCGAGAGTAAACTAATGGAAGTCTTTGAGATATCAAGCACTTGCTTAGAGACGAGACAAGTGATTATGGAGGTGTGCGACATTATTGCGACCAGGGGGGC TAGGCTATCTCCTGCGGGGATATTCGGGATCCTGAAGAAAGTTGGAAGAGACAGAGTTGTTGAGGGCGGGAATGAGAAGAAATCCGTGATAGCGTTAGAT GGGGGGATGTTTGAGCACTATAGTAAGTTTAGAGAGTGTTTGAAGAGCACCCTAAGGGAGCTCTTGGGAGAGGAAGTTTCTGAGAAGGTGAGTGTAGAGC TCTCAAATGATGGCTCTGGCATTGGTGCAGCACTATTGGCTGCTTCTCACTCGCAATACTTGAGAGGAGGGGAGGTTGTAGAAGAGCTTTGA
AA sequence Show only first row Show all	>Lus10034980 pacid=23181351 polypeptide=Lus10034980 locus=Lus10034980.g ID=Lus10034980.BGIv1.0 annot-version=v1.0 MTAEMYAGLFPQSVSKLKMLISYVDNLPTGDEKGLFYALDLGGTNFRVMRVVLGGQEDRVVKQESVEVSIPPHVMTGTSDKAMKRVDLDMRVAALINDTI GTLAGGRYNNRDVIAAVILGTGTNTACVERADTIQKWQGPRPKSGEMSSHLPLREFDKALDIESMNPGDQFLKVDIFHYLLRRKRNLAKSSTKDGCRAAL FSDVVPLKLRSPFVLRTPVMSAMHHDTPSDLKVVESKLMEVFEISSTCLETRQVIMEVCDIIATRGARLSPAGIFGILKKVGRDRVVEGGNEKKSVIALD GGMFEHYSKFRECLKSTLRELLGEEVSEKVSVELSNDGSGIGAALLAASHSQYLRGGEVVEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	0	1
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028514 [exp]	1.0	0.9400
					Lus10041636 [exp]	5.7	0.9274
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10015190 [exp]	6.0	0.9067
AT4G18540			unknown protein		Lus10036092 [exp]	9.8	0.8955
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10000185 [exp]	15.5	0.8373
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10002243 [exp]	16.2	0.8804
					Lus10002317 [exp]	16.3	0.8864
					Lus10007128 [exp]	17.0	0.8574
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	18.8	0.8808
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10023598 [exp]	20.1	0.8726

Compare expression of checked genes

Lus10034980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.