Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 176 / 6e-55 Pectin lyase-like superfamily protein (.1) AT5G47500 60 / 2e-11 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 50 / 1e-07 Pectin lyase-like superfamily protein (.1) AT5G55590 47 / 6e-07 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT1G05310 45 / 3e-06 Pectin lyase-like superfamily protein (.1) AT3G29090 43 / 2e-05 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT1G23200 39 / 0.0005 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012942 [exp] 213 / 5e-69 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 175 / 9e-55 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 176 / 2e-54 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 90 / 6e-22 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 88 / 2e-21 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 61 / 1e-11 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 54 / 4e-09 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 49 / 2e-07 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041699 [exp] 48 / 6e-07 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 181 / 6e-57 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 121 / 7e-34 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 69 / 2e-14 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 50 / 7e-08 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 50 / 1e-07 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 48 / 4e-07 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G104800 [exp] 47 / 9e-07 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 45 / 3e-06 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.001G365700 [exp] 41 / 0.0001 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.006G134500 [exp] 40 / 0.0003 AT4G33220 677 / 0.0 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10034981 pacid=23181341 polypeptide=Lus10034981 locus=Lus10034981.g ID=Lus10034981.BGIv1.0 annot-version=v1.0 ATGAAGTGGGTCCATTTCGTTGGCAGCTTAAAGCATTCGGTCTTCAAAGTAGCCAAGAACAAGCTCTTCCCATCTTTTACCCTCACCGTCGACAAGAACC CTGTCGTCGGTGACTTCACCTCCATTCAGGACGCCGCTGACTCCCTCCCTTTCGTCAATCTTGCGAGAGTGTTGATCAAGGTCCATGCAGGAGGAGAAAG TAAACATACCACAATAGAAGGAGAAGGAGCTGACAAGACAATAGTAGAATGGGAGGACACTGCTCAAACCCCTGGCCCTAAGGGTCAGCCAATGGGAATC TACGCTTCCGCCACGTTTGCAGTCAACTCCCCGTTTTTCATCGCCAGAAACATCACTTTCAGAAGGTTACTAAAAGACGCCCTGAAATTTGAATTAAACG ATGCATTATATTTGTTATGA
AA sequence Show only first row Show all	>Lus10034981 pacid=23181341 polypeptide=Lus10034981 locus=Lus10034981.g ID=Lus10034981.BGIv1.0 annot-version=v1.0 MKWVHFVGSLKHSVFKVAKNKLFPSFTLTVDKNPVVGDFTSIQDAADSLPFVNLARVLIKVHAGGESKHTTIEGEGADKTIVEWEDTAQTPGPKGQPMGI YASATFAVNSPFFIARNITFRRLLKDALKFELNDALYLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	0	1
					Lus10021453 [exp]	1.7	0.9678
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	2.4	0.9153
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	2.4	0.9437
					Lus10015310 [exp]	3.0	0.9401
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10023938 [exp]	3.6	0.8756
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	4.7	0.8869
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	5.3	0.9027
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	5.5	0.8887
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	6.9	0.8861
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039502 [exp]	7.2	0.9202

Compare expression of checked genes

Lus10034981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.