Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26300 822 / 0 EMB1027 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1) AT1G66530 797 / 0 Arginyl-tRNA synthetase, class Ic (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012940 [exp] 1025 / 0 AT4G26300 966 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198500 [exp] 844 / 0 AT4G26300 986 / 0.0 embryo defective 1027, Arginyl-tRNA synthetase, class Ic (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00750 [flax] [poplar] tRNA-synt_1d tRNA synthetases class I (R) CL0258 [flax] [poplar] DALR PF05746 [flax] [poplar] DALR_1 DALR anticodon binding domain
Representative CDS sequence Show only first row Show all	>Lus10034982 pacid=23181395 polypeptide=Lus10034982 locus=Lus10034982.g ID=Lus10034982.BGIv1.0 annot-version=v1.0 ATGTTAGCCTCTTCCCTAGCAGCCATCCTACTCCCGCCGGTCTCTTCTTCTCCTTCGCTTCTCTCCCTCCGTCGCCTCTCTCATCTCCCGCCGCCGATGA TTTTAGTCTTGGTTGATTCAGTGGATGGAATCTGTACTTTCGTTTGTGCTGCATCCGCTGGAAACTTTGGAGACTACCAATGCAATAATGCCATGAAAAT TTTCGCTCAACTCAGAGCTAAAGGTGGTAACCAGTTTAGAGGACCACCCGCAGTTGGAAAGGTATCATCAGTTTTTGTTGCATCCCTTGGAGCTCTTTCT CTAAGCCAGAGCTTGTTTGTCGTCCCTTTTGACGGCATGACTGGACGATTTCAGCATTTCTACTGTAGATGTACTTATATTTCTTTCTTCGGTCAGGCTA TTAAGGACAATCTCCCTCAGACAGAGATGATTGAATCTAGCTCTGTTGCTGGGCCTGGATTTGTGAATGTTGTGTTGTCTACTGCCTGGATGGCTAAGTG CATCCAAAATATGCTACTAGATGGGATTGATACGTGGTCACCTAAGTTGCCTATTAAGAAGGCCGTGGTCGACTTTTCCTCGCCAAATATTGCAAAAGAA ATGCATGTTGGTCATCTTAGATCTACAATTATTGGAGACACAATTGCCCGCATGCTTGAGTTCTCGCAAGTGGATGTTCTTAGGAGAAACCATGTTGGTG ACTGGGGAACACAGTTTGGCATGTTGATAGAACACCTCTTTGAGCAATTTCCCAACTTTGAGGAAGTTAATGAAGCAGCTATCGGGGACCTACAGGCATT TTATAAGGCATCAAAACAGAGATTCGATGCTGATTCTGAATTTAAGGAACGAGCGCAAAAAGCAGTTGTTCGACTCCAGGGTGGAGAACAGAGATACAGA GATGCGTGGGCACAGATCTGTGCAATTAGCCGGACGGAGTTTGACAGTGTTTATGGAAGACTTAAAGTTGAGTTGGAGGAGAAGGGAGAGAGCTTTTATA ATCCTTTCATACCTTCGGTCATAGAAGGGCTAACCAATCAAGGGTTGGTTGAAGAGAGTGAAGGTGCCCGTGTTATTTTTCTTGAAGGATTTAGTATTCC TCTCATCGTCGTTAAGAGTGATGGTGGTTACAACTATGCCTCTACTGATCTGACTGCACTTTGGTATCGTCTAAATGAAGAGAAAGCTGAGTGGATAATC TATGTGACTGATGTGGGTCAACATCAGCACTTTGAGATGGTATTCAAGGCTGCTATAATTGCTGGTTGGCTCCCTACTGAGCCTAACAAATATCCTAAAA CAAGCCATGTCGGTTTTGGGCTCGTTCTTGGAGACGATGGCAAGCGGTTTAGAACTCGATCCACAGAGGTTGTTCGGTTAGCTGATTTGCTTGATGAAGC CAAGACCCGAAGCAAAAAAGTACTTATCGAGCGTGGTATGTTGATTTATATCTCTCTGCTTTCAACAGGGAAGGATAAAGAGTGGCCAGCAGAGGAGCTT GACCAAATTGCTGAAGCAATTGGCTATGGTGCTGTCAAGTATGCAGACTTGAAGAATAACAGAACGACTAACTATGCTTTCAGTTATGAGCAAATGCTCA GTGACAAGGGTAATACTGCTGTTTACCTGCTGTACGCACATGCTAGGATATGTTCCATCATCAGAAGGTCTGGGAGAGATATTGAGGAGTTGAAGAATAC GGGAATCTTATCGTTGGTGGAAAAAGATGAGCGTGTTCTTGGGCTTCATCTGCTCCGATTTTCTGAGATTGTGGAGGAGGCATGTACGAATCTGCTGCCA AGTGTATTGTGTGAATACCTATACAATTTGTCGGAGAACTTCAGCAAATTCTACAACAATTGTCAGGAGCTTTTATCTGACTGTCCTCACCATGGTTATA CAGACAGTCAGCTGGAGGACATGTTTAGTAGATCATTAGACCGAGCTACCTCAATACTAGTACATCAACTAGAAAATGGAGATGTTACCGCCCTCACTCC TGATGCTGCTTTAGCACATTTTGCTTCATGTGCTTACTAG
AA sequence Show only first row Show all	>Lus10034982 pacid=23181395 polypeptide=Lus10034982 locus=Lus10034982.g ID=Lus10034982.BGIv1.0 annot-version=v1.0 MLASSLAAILLPPVSSSPSLLSLRRLSHLPPPMILVLVDSVDGICTFVCAASAGNFGDYQCNNAMKIFAQLRAKGGNQFRGPPAVGKVSSVFVASLGALS LSQSLFVVPFDGMTGRFQHFYCRCTYISFFGQAIKDNLPQTEMIESSSVAGPGFVNVVLSTAWMAKCIQNMLLDGIDTWSPKLPIKKAVVDFSSPNIAKE MHVGHLRSTIIGDTIARMLEFSQVDVLRRNHVGDWGTQFGMLIEHLFEQFPNFEEVNEAAIGDLQAFYKASKQRFDADSEFKERAQKAVVRLQGGEQRYR DAWAQICAISRTEFDSVYGRLKVELEEKGESFYNPFIPSVIEGLTNQGLVEESEGARVIFLEGFSIPLIVVKSDGGYNYASTDLTALWYRLNEEKAEWII YVTDVGQHQHFEMVFKAAIIAGWLPTEPNKYPKTSHVGFGLVLGDDGKRFRTRSTEVVRLADLLDEAKTRSKKVLIERGMLIYISLLSTGKDKEWPAEEL DQIAEAIGYGAVKYADLKNNRTTNYAFSYEQMLSDKGNTAVYLLYAHARICSIIRRSGRDIEELKNTGILSLVEKDERVLGLHLLRFSEIVEEACTNLLP SVLCEYLYNLSENFSKFYNNCQELLSDCPHHGYTDSQLEDMFSRSLDRATSILVHQLENGDVTALTPDAALAHFASCAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	0	1
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	1.4	0.9401
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	2.2	0.9503
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10018820 [exp]	3.5	0.9221
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10023161 [exp]	5.3	0.8997
AT1G33970			P-loop containing nucleoside t...		Lus10005299 [exp]	7.9	0.9079
AT2G40090		ATATH9	ABC2 homolog 9 (.1)		Lus10040196 [exp]	8.1	0.9031
AT5G61930		APO3	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10041934 [exp]	8.9	0.8950
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	9.2	0.9239
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10032635 [exp]	9.2	0.9048
AT2G36305		RCE1, ATFACE2, ...	RAS-CONVERTING ENZYME 1, ARABI...		Lus10022724 [exp]	10.4	0.8882

Compare expression of checked genes

Lus10034982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.