Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56580 550 / 0 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G29810 375 / 2e-129 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 343 / 9e-117 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G40440 209 / 9e-63 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT1G51660 178 / 1e-52 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 174 / 2e-51 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G18350 157 / 3e-45 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G73500 157 / 4e-45 ATMKK9 MAP kinase kinase 9 (.1) AT1G32320 139 / 3e-38 ATMKK10 MAP kinase kinase 10 (.1) AT3G06230 130 / 3e-35 ATMKK8 MAP kinase kinase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012938 [exp] 646 / 0 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10027623 [exp] 383 / 5e-132 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 330 / 3e-110 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10001137 [exp] 200 / 5e-60 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10022265 [exp] 202 / 6e-60 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10035764 [exp] 169 / 3e-49 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10001081 [exp] 138 / 1e-38 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10037070 [exp] 125 / 4e-31 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036915 [exp] 125 / 5e-31 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068500 [exp] 573 / 0 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.018G050800 [exp] 391 / 2e-135 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 377 / 4e-130 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.001G345500 [exp] 204 / 5e-61 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Potri.008G009800 [exp] 177 / 2e-52 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.015G030700 [exp] 174 / 2e-51 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.010G249300 [exp] 173 / 1e-50 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.012G043200 [exp] 158 / 2e-45 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.010G049500 [exp] 147 / 3e-41 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 138 / 7e-38 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10034986 pacid=23181414 polypeptide=Lus10034986 locus=Lus10034986.g ID=Lus10034986.BGIv1.0 annot-version=v1.0 ATGAAAATCAAGACGCCATTGCAGCAGCTGAAGCTCTCTGTTCCGGCTCAAGAAACTCTAATCTCATCTTTCCTGACAGCAAGTGGTACTTTTCACGATG GGGATTTGCTGTTGAATCAGAAAGGTCTGCGGCTTATCTCCGAAGAGAAGGAATCACAGCCATCAGAGTGCAAGGAGGTTGATATAGAGTTTTCATTAGA AGATCTTGAAACAATCAAAGTGATTGGAAAGGGCAGCGGAGGTGTTGTCCAACTTGTTCGACATAAATGGGTTGGGACTTTATTTGCCTTGAAGGTCATC CAGATGAACATACAGGAGGAAATTCGTAAACAGATTGTACAGGAGCTGAAAATAAACAAAGGCTCGCAGTGTCCACAAGTGGTTATTTGTCACCATTCAT TTTATCACAATGGAGCTTTTTCACTTGTGTTAGAATACATGGACCGCGGCTCTCTTGCAGATGTGATCAGACAAGTCAAAACTATTCTGGAACCTTATTT GGCAGTTGTATGTAAACAGGTTTTGCAAGGTCTTGTGTATCTCCACCATGAAAGACACGTTATACATAGAGACATTAAGCCGTCGAACCTTCTAGTAAAC CACAAGGGAGAAGTGAAGATAACTGATTTCGGTGTGAGTGCTATGCTAGCAAACTCCATGGGTCAGCGGGATACATTTGTTGGAACTTACAACTACATGT CGCCAGAGCGAATTAGCGGCAGCACCTATGATTACAGCAGTGATGTTTGGAGCTTGGGCTTGGTAGTGCTTGAATGTGCTCTTGGACACTTCCCCTATAT GAGGTCAGACGATGAACAGGAGTGGCCAAGTTTTTACGAGCTCCTCGAAGCCATCGTAGATAGTCCTCCACCATCTGCCCCTCCAGACCAATTTTCTCCT GAATTCTGTTCCTTCGTATCAGCCTGCACTGTGCTTTCTTCGCATTGCCTTTTGACTATGTCTGATTTCTACAGCATACAAAAGGAGCCAAGCGAGAGGT CATCCTCATTGGATCTTTTGAGCCATCCTTTCATAAAAAAGTTTGAAGACAAAGATATCGAGCTTGGAATTTTGCTTAGTAGCTTGGAACCCCCAGTAAA TTGCCCAAGATAA
AA sequence Show only first row Show all	>Lus10034986 pacid=23181414 polypeptide=Lus10034986 locus=Lus10034986.g ID=Lus10034986.BGIv1.0 annot-version=v1.0 MKIKTPLQQLKLSVPAQETLISSFLTASGTFHDGDLLLNQKGLRLISEEKESQPSECKEVDIEFSLEDLETIKVIGKGSGGVVQLVRHKWVGTLFALKVI QMNIQEEIRKQIVQELKINKGSQCPQVVICHHSFYHNGAFSLVLEYMDRGSLADVIRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVN HKGEVKITDFGVSAMLANSMGQRDTFVGTYNYMSPERISGSTYDYSSDVWSLGLVVLECALGHFPYMRSDDEQEWPSFYELLEAIVDSPPPSAPPDQFSP EFCSFVSACTVLSSHCLLTMSDFYSIQKEPSERSSSLDLLSHPFIKKFEDKDIELGILLSSLEPPVNCPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10034986 [exp]	0	1
AT4G18465			RNA helicase family protein (....		Lus10025127 [exp]	9.6	0.8495
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10010629 [exp]	12.5	0.7998
AT5G14030			translocon-associated protein ...		Lus10035166 [exp]	13.3	0.7705
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042260 [exp]	14.0	0.8120
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	16.9	0.8465
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10024126 [exp]	19.1	0.8462
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10013739 [exp]	21.5	0.8317
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	26.8	0.8204
AT4G14305			Peroxisomal membrane 22 kDa (M...		Lus10011798 [exp]	27.3	0.8429
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	28.1	0.8217

Compare expression of checked genes

Lus10034986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.