Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56590 543 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 437 / 2e-150 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G01630 330 / 4e-109 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 308 / 3e-101 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 310 / 5e-101 O-Glycosyl hydrolases family 17 protein (.1) AT2G16230 301 / 7e-98 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 298 / 6e-97 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 295 / 2e-95 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT4G34480 291 / 1e-93 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 289 / 4e-93 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012937 [exp] 677 / 0 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10007929 [exp] 320 / 3e-105 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10013465 [exp] 318 / 1e-104 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 311 / 6e-102 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004044 [exp] 302 / 4e-98 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10002295 [exp] 300 / 5e-97 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039179 [exp] 300 / 5e-97 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10004391 [exp] 292 / 7e-95 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 291 / 1e-93 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068600 [exp] 604 / 0 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 315 / 4e-103 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 311 / 1e-101 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 309 / 6e-101 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 304 / 4e-99 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 300 / 1e-97 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 293 / 3e-95 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G006500 [exp] 294 / 4e-95 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.004G010500 [exp] 291 / 1e-93 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 291 / 1e-93 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10034987 pacid=23181430 polypeptide=Lus10034987 locus=Lus10034987.g ID=Lus10034987.BGIv1.0 annot-version=v1.0 ATGCTGATGACCTTCCAACACAACATAAGGCAGTCCAGCTGGTTCAGCAGCATAACATCAAATACGTCAGGATTTACGATGCTGACATCCAAGTTCTCAA GGCGTTTGCAAATCGAGCTCATGATCGGTATAACAAACTCCGATTTGTTGCCCTTCTCCCAGTTCCAATCCAACGCAGATACATGGCTAAAAAACAGCAT ACTCCCTTACTACCCAGCCACAAAAATAACATACATTGCTGTGGGTGCTGAAGTTACAGATTCCCCCAGCAATGTTTCATCTTTAGTAGTACCAGCTATG CACAACATCCTCACATCATTGAAAGAAGCAGGTCTTCACAAAAGGATCAAAGTCTCGACGACTCATTCTCTCGGAGTGTTGTCTCGATCTCTCCCTCCTT CCGCTGGAGCCTTCAGCAGCAACTATGCATCTTTCCTGAAACCAATGTTGGAATTCCTAGCTGAGAACCAGTCCCCTTTCATGCTCGATATCTACCCTTA TTACGCTTACCGGGATTCTCCGAGTAACGTGTCCTTGGATTATGCTCTATTCCAGTCTTCATCCGAAGTCATTGACCCGAATACTGGTTTTCTCTACACT AACATGTTTGATGCTCAGATTGATGCACTTTACTTCGCTCTCATGACTCTCAACTTCAGAACTATCAAGGTTATCGTCACCGAGACAGGCTGGCCATCGA AAGGTTCGCCTAAAGAGACGGATGCAACTCCTGATAATGCTCAGACGTACAATGCCAACTTGATTCGCCATGTCATTAACAACATGGGCACTCCTGCAAA GCCGGGAGAGGTTGTGGATACATACATCTTCTCGCTGTTTAATGAGAACAGGAAGCCTGGGATGGAATCCGAAAGGAACTGGGTGCTAGCTTCAACAACA GCCAGTTGGTGCATTGCTTCTGGTAATGTTACGCAGCGGGACTTGCAGAATGCGCTTGACTGGGCGTGCGGTAGAGGGAATGTGGATTGCTCGCCGATTC TGCCTAGCCAGCCTTGTTTGGAGCCAGATGCTCTGGTTTCTCATGCATCTTACGCGTTCAATGTTTACTACCAGCAAAATGGAGCTACTGATATTGCTTG CAGTTTTGGAGGCACCGGTGTCAGAGTCGACAAGGATCCCAGTTATGACAAATGCCTGTATATGACAGCTGGGGGTAACAAGACAGGAGCTGGTGGTAAT ACTAGGCAATGGCTTCTTCGTCTTCGTCGAAGAGCTCATCCTCTTCAAGGAGTATGA
AA sequence Show only first row Show all	>Lus10034987 pacid=23181430 polypeptide=Lus10034987 locus=Lus10034987.g ID=Lus10034987.BGIv1.0 annot-version=v1.0 MLMTFQHNIRQSSWFSSITSNTSGFTMLTSKFSRRLQIELMIGITNSDLLPFSQFQSNADTWLKNSILPYYPATKITYIAVGAEVTDSPSNVSSLVVPAM HNILTSLKEAGLHKRIKVSTTHSLGVLSRSLPPSAGAFSSNYASFLKPMLEFLAENQSPFMLDIYPYYAYRDSPSNVSLDYALFQSSSEVIDPNTGFLYT NMFDAQIDALYFALMTLNFRTIKVIVTETGWPSKGSPKETDATPDNAQTYNANLIRHVINNMGTPAKPGEVVDTYIFSLFNENRKPGMESERNWVLASTT ASWCIASGNVTQRDLQNALDWACGRGNVDCSPILPSQPCLEPDALVSHASYAFNVYYQQNGATDIACSFGGTGVRVDKDPSYDKCLYMTAGGNKTGAGGN TRQWLLRLRRRAHPLQGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10034987 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	2.0	0.8794
AT5G59800		ATMBD7, MBD7	ARABIDOPSIS THALIANA METHYL-CP...		Lus10005888 [exp]	2.0	0.8665
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10001601 [exp]	3.2	0.8415
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	3.9	0.8576
AT5G08340			Nucleotidylyl transferase supe...		Lus10028973 [exp]	5.0	0.8242
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Lus10030451 [exp]	12.7	0.8474
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10018188 [exp]	13.2	0.8226
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	13.3	0.8661
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	14.5	0.8281
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	17.1	0.8565

Compare expression of checked genes

Lus10034987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.