Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19760 219 / 3e-75 PRF1, PFN1 profilin 1 (.1) AT4G29340 219 / 4e-75 PRF4 profilin 4 (.1) AT4G29350 218 / 9e-75 PRF2, PFN2, PRO2 profilin 2 (.1) AT2G19770 216 / 5e-74 PRF5 profilin 5 (.1) AT5G56600 217 / 9e-74 PRF3, PFN3 profilin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012936 [exp] 262 / 5e-92 AT4G29350 223 / 2e-76 profilin 2 (.1) Lus10043040 [exp] 251 / 2e-87 AT5G56600 223 / 1e-76 profilin 3 (.1.2) Lus10011138 [exp] 250 / 2e-87 AT2G19760 225 / 2e-77 profilin 1 (.1) Lus10037591 [exp] 229 / 3e-79 AT2G19770 231 / 6e-80 profilin 5 (.1) Lus10006846 [exp] 227 / 2e-78 AT2G19770 229 / 5e-79 profilin 5 (.1) Lus10011139 [exp] 220 / 1e-75 AT4G29340 238 / 1e-82 profilin 4 (.1) Lus10034989 [exp] 220 / 2e-75 AT4G29340 234 / 6e-81 profilin 4 (.1) Lus10043041 [exp] 220 / 2e-75 AT4G29340 239 / 9e-83 profilin 4 (.1) Lus10012935 [exp] 220 / 2e-75 AT4G29340 235 / 2e-81 profilin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190800 [exp] 248 / 1e-86 AT2G19760 196 / 8e-66 profilin 1 (.1) Potri.003G047700 [exp] 241 / 6e-84 AT4G29340 224 / 5e-77 profilin 4 (.1) Potri.018G057600 [exp] 236 / 5e-82 AT4G29340 188 / 5e-63 profilin 4 (.1) Potri.006G235200 [exp] 231 / 8e-80 AT4G29340 216 / 1e-73 profilin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF00235 [flax] [poplar] Profilin Profilin
Representative CDS sequence Show only first row Show all	>Lus10034988 pacid=23181432 polypeptide=Lus10034988 locus=Lus10034988.g ID=Lus10034988.BGIv1.0 annot-version=v1.0 ATGTCGTGGCAGACCTACGTTGACGACCACCTCTTGTGCGAACAAGAGGGCAACCACCTCTCTGCTGCCGCCATCATCGGCCATGACGGCAGCGTTTGGG CCCAGAGCGCCACCTTCCCTCAGTTGAAGGCTGAAGAAGTTAGTGGTATCATGAAGGACTTCGATGAGCCCGGCTCACTTGCACCGACTGGGTTGTACCT TGGAGGCACCAAGTATATGGTGATTCAGGGGGAGCCAGGAGCTGTCATTCGAGGCAAGAAGGGAGCTGGTGGGGTGACGATTAAGAAGACTAGCCAGGCA TTGATCATAGGTATATATGATGAGCCAATGACTCCAGGGCAGTGCAACATTGTGGTCGAAAGGCTTGGGGATTATCTCATCGACCAGGGCCTTTAA
AA sequence Show only first row Show all	>Lus10034988 pacid=23181432 polypeptide=Lus10034988 locus=Lus10034988.g ID=Lus10034988.BGIv1.0 annot-version=v1.0 MSWQTYVDDHLLCEQEGNHLSAAAIIGHDGSVWAQSATFPQLKAEEVSGIMKDFDEPGSLAPTGLYLGGTKYMVIQGEPGAVIRGKKGAGGVTIKKTSQA LIIGIYDEPMTPGQCNIVVERLGDYLIDQGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	0	1
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10011502 [exp]	1.0	0.9251
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10030436 [exp]	2.0	0.9042
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	2.4	0.9036
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	3.2	0.8823
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	4.5	0.8977
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10024418 [exp]	4.6	0.8895
AT2G38610			RNA-binding KH domain-containi...		Lus10035015 [exp]	5.1	0.8765
AT3G13410			unknown protein		Lus10010298 [exp]	7.1	0.8610
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Lus10019365 [exp]	8.1	0.8955
AT1G12310			Calcium-binding EF-hand family...		Lus10028915 [exp]	8.2	0.8727

Compare expression of checked genes

Lus10034988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.