Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29330 347 / 2e-121 DER1 DERLIN-1 (.1) AT4G04860 155 / 2e-46 DER2.2 DERLIN-2.2 (.1) AT4G21810 155 / 4e-46 DER2.1 DERLIN-2.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012934 [exp] 453 / 2e-162 AT4G29330 347 / 2e-120 DERLIN-1 (.1) Lus10018347 [exp] 156 / 2e-46 AT4G04860 446 / 2e-161 DERLIN-2.2 (.1) Lus10006771 [exp] 149 / 5e-44 AT4G04860 437 / 6e-158 DERLIN-2.2 (.1) Lus10020053 [exp] 149 / 7e-44 AT4G04860 437 / 1e-157 DERLIN-2.2 (.1) Lus10007664 [exp] 112 / 7e-30 AT4G04860 375 / 1e-133 DERLIN-2.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153000 [exp] 348 / 5e-122 AT4G29330 355 / 7e-125 DERLIN-1 (.1) Potri.004G233200 [exp] 296 / 2e-101 AT4G29330 293 / 4e-100 DERLIN-1 (.1) Potri.004G233100 [exp] 296 / 4e-101 AT4G29330 293 / 8e-100 DERLIN-1 (.1) Potri.011G000900 [exp] 151 / 9e-45 AT4G04860 410 / 5e-147 DERLIN-2.2 (.1) Potri.004G018200 [exp] 147 / 3e-43 AT4G04860 410 / 7e-147 DERLIN-2.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF04511 [flax] [poplar] DER1 Der1-like family
Representative CDS sequence Show only first row Show all	>Lus10034990 pacid=23181385 polypeptide=Lus10034990 locus=Lus10034990.g ID=Lus10034990.BGIv1.0 annot-version=v1.0 ATGGGAGAATCTGAAGCCAATTCGAATTCGGTGATTAAACGAATTGGAATGGACGGACTCACGGTTACCGATCATCTTTTCGCGTTTAGGTACTACCGTT CCCTTCCACCTATTACCAAGGCTTATGGAACCTTGTGCCTTGCGGTCACTACACTCTGCAGCCTCCAGCTGGTTAGTCCTTGGTATATTGCGTTGCTATA TCACGAGGCGTTCTCGCGATTTCAGGTGTGGAGGCTTATTACTAACTTCTTCTTTCTTGGGTCATTCTCCGTCAATTTTGGTATTCGTCTCTTGATGATA GCAAGGTACGGTGTTCAACTGGAGCAGGCAACGTTTGCTCGACGCACTGCAGATTTCCTTTGGATGATGATCTTTGGATGCTTCGCGCTTCTGATTCTGT CGGCCATCCCTTTTCTCCGGATCCCTTTCTTGGGCATATCACTTGTGTTCATGCTGCTTTATGTCTGGAGTAGAGAATTTCCAAATGCTAATATCAACTT ATACGGCCTTGTGACTCTGAGGGCTTTTTACCTACCATGGGCGATGCTGGCTCTGGATGTCATTTTTGGCTCGCCAATTATGCCCGATTTGCTGGGAATC ATCGCAGGACATCTCTACTACTTCCTGACTGTGCTGCACCCGCTTTCCACTGGAAGGAACCACCTCAAGACTCCAAGATGGCTACAGAAACTGGTGAGAA GATACAGGATTGGAGCTCCAGCGCTAGTGAGCAACCCTGCACAGCAGGAACCGGAGTCTGGTAGAGGGACAGCGTTCAGAGGAAGATCGTATAGACTGAG TGATTAG
AA sequence Show only first row Show all	>Lus10034990 pacid=23181385 polypeptide=Lus10034990 locus=Lus10034990.g ID=Lus10034990.BGIv1.0 annot-version=v1.0 MGESEANSNSVIKRIGMDGLTVTDHLFAFRYYRSLPPITKAYGTLCLAVTTLCSLQLVSPWYIALLYHEAFSRFQVWRLITNFFFLGSFSVNFGIRLLMI ARYGVQLEQATFARRTADFLWMMIFGCFALLILSAIPFLRIPFLGISLVFMLLYVWSREFPNANINLYGLVTLRAFYLPWAMLALDVIFGSPIMPDLLGI IAGHLYYFLTVLHPLSTGRNHLKTPRWLQKLVRRYRIGAPALVSNPAQQEPESGRGTAFRGRSYRLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29330		DER1	DERLIN-1 (.1)		Lus10034990 [exp]	0	1
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	1.4	0.8129
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	4.5	0.8056
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	8.4	0.7650
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	10.2	0.7965
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Lus10009209 [exp]	27.0	0.7691
AT1G53250			unknown protein		Lus10028136 [exp]	28.2	0.8004
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	41.4	0.7860
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	43.0	0.7610
AT5G02440			unknown protein		Lus10024400 [exp]	43.7	0.7850
AT2G33255			Haloacid dehalogenase-like hyd...		Lus10004405 [exp]	46.9	0.7699

Compare expression of checked genes

Lus10034990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.