Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29310 548 / 0 Protein of unknown function (DUF1005) (.1) AT1G10020 378 / 3e-128 Protein of unknown function (DUF1005) (.1) AT3G19680 297 / 5e-96 Protein of unknown function (DUF1005) (.1) AT1G50040 280 / 5e-90 Protein of unknown function (DUF1005) (.1) AT5G17640 265 / 2e-84 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012933 [exp] 655 / 0 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1) Lus10032807 [exp] 366 / 1e-123 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 239 / 6e-74 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 238 / 6e-73 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112600 [exp] 417 / 2e-143 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 412 / 1e-141 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 328 / 6e-109 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 328 / 1e-108 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 285 / 5e-92 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [flax] [poplar] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Lus10034991 pacid=23181411 polypeptide=Lus10034991 locus=Lus10034991.g ID=Lus10034991.BGIv1.0 annot-version=v1.0 ATGGATCCCTGTCCATTCCTCCGCTTAATCATCGAATCCCTAGCCCTGAAACTCCCCTTCGCCACCAAACCAGCCGGCTCAGGCGTCCACCCATCTTCAT CTCCTTGCTTCTGCGTCCTCAAAATCAAAGGATTCCCTACCCAGACCACTATCCTCCCCTTGTCTTCTTCTTCTTCCACCAATGAACTCTCCAACCCTGA CGCAGCAACCTCCGCCCCTGGCCTTCACCTCGACTCCACCGCCCTCCGCCGCCTCTCCGGCAAGCCCATTACCCTCCGGGTCTCTGTTTACACGGGCCGG ATGGGCCGCTCCTGCGGGGTTAGCGGGCGGAAGCTTCTGGGTAAAGTTGAGGTTAGTGTCGATTTGGGGGTAAATCCAGAATCCAGGCGTAGTGTGTTTC AAGATGGGTGGTTAACCCTGCGCGGTCAACCGGCCGGTAAACCTGCGGCCAGGATCCACATGACTGTCCGGTCGGAACCGGACCCGCGGGTCGTGGAACC GGACCCGCGGTTCGTGTTCCAGTTCGGCGGGGAGCCGGAGTGTAGCCCCGTTGTTTTCCAGATCCAGGGGCATATTCGTCAGCCGCTGTTCAGCTGCAAG TTCAGTGCTGACCGCAATTCACGCACTCGATCTCTTCCCTCAGATTTCAACAACCCATCAAACAGCAGATGGCACACCAAAACACTCTCCGCACGCGACA TAGATCGAGCCAGCCGGAGGGAAAGAAAAGGGTGGATGATAATGATCCACGACCTTTCAGGTTCACCAGTAGCAGCAGCATCAATGATCACACCTTTCGT CCCTTCCCCCGGGTCAGACCGAGTCTCCCGCTCCAATGCAGGGGCATGGCTAATCCTCCGACCCCACGGCTTCTCCGTCAGCACGTGGAAGCCATGGGGG CGCCTCGAGGCCTGGAGGGAACGAGGTGCAGTCGACGGTTTAGGATATAAATTTGAGCTCATGACTGAAAGCAAAGGTGGTGGGGGCAGAGTTGTCATTG CGGAAGGTACGATGAGTGTGAAGAAGGGAGGGAGATTCGGTATCGATGGTAGGACAGTGATGGATTCGGTGTCTCGGTTAGCGGTTAAAGGATTTGTGAT GGGATCGACGGTGGAAGGTGAGGGGAAAGTTAGTAAGCCAGTGGTTGAGGTGGGCGCTCAGCATGTGACGTGCATGGGAGATGCTGCTCTGTTTGTGGCG TTATCGGCAGCCATTGATCTTAGCATGGATGCTTGTAGGTTGTTCTCACATAAGTTGAGGAAGGAGCTTTGCCATGATGATCAAGATGGTTCCTTTATTT AG
AA sequence Show only first row Show all	>Lus10034991 pacid=23181411 polypeptide=Lus10034991 locus=Lus10034991.g ID=Lus10034991.BGIv1.0 annot-version=v1.0 MDPCPFLRLIIESLALKLPFATKPAGSGVHPSSSPCFCVLKIKGFPTQTTILPLSSSSSTNELSNPDAATSAPGLHLDSTALRRLSGKPITLRVSVYTGR MGRSCGVSGRKLLGKVEVSVDLGVNPESRRSVFQDGWLTLRGQPAGKPAARIHMTVRSEPDPRVVEPDPRFVFQFGGEPECSPVVFQIQGHIRQPLFSCK FSADRNSRTRSLPSDFNNPSNSRWHTKTLSARDIDRASRRERKGWMIMIHDLSGSPVAAASMITPFVPSPGSDRVSRSNAGAWLILRPHGFSVSTWKPWG RLEAWRERGAVDGLGYKFELMTESKGGGGRVVIAEGTMSVKKGGRFGIDGRTVMDSVSRLAVKGFVMGSTVEGEGKVSKPVVEVGAQHVTCMGDAALFVA LSAAIDLSMDACRLFSHKLRKELCHDDQDGSFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29310			Protein of unknown function (D...		Lus10034991 [exp]	0	1
AT4G29310			Protein of unknown function (D...		Lus10012933 [exp]	1.0	0.8946
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	5.3	0.8667
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	6.3	0.8527
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009000 [exp]	6.5	0.8564
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10022534 [exp]	9.5	0.8073
AT1G23965			unknown protein		Lus10030641 [exp]	9.6	0.8557
AT5G18050			SAUR-like auxin-responsive pro...		Lus10008994 [exp]	10.4	0.8521
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10033234 [exp]	10.6	0.8171
AT1G26260	bHLH	CIB5, bHLH076	cryptochrome-interacting basic...		Lus10023562 [exp]	12.5	0.8242
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	12.6	0.8277

Compare expression of checked genes

Lus10034991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.