Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012932 [exp] 96 / 3e-25 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006400 [exp] 43 / 2e-05 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034993 pacid=23181349 polypeptide=Lus10034993 locus=Lus10034993.g ID=Lus10034993.BGIv1.0 annot-version=v1.0 ATGAGGACAAGGGAGCGGGGGAGTAGGGGAGGTGGAGGAGGTCGACCTCGTGATAGGAGGTGGTCCCCTCGTTATTCCCGCTCACCGCGATACTCTCGTT CGCCTCCACGTCGTGCAAGGTCGCGGTCTCGTAGCCGTGATTATTCCCCACCTGCAAAACAAAGGGACTACTTTAGATCTGTTTCACCCCAAGAGAGAAG GGTTAGCAAAGAGAGAGCATACTCTCGTTCGAGGAGCCGTAGCCTAACACCAAGAGGAGCTCCAAGCGAGGGTGTCGTTAGGAGCCGAAGTCTCAGCCGC AGCCGCAGCCCTCCTAGGAGGAGCAGAAGCGCAGCAAATCATGATGAGGACGATTACCCCAGGGAGCGCAACGAGGATCGATCTCCAAGCCCGTGA
AA sequence Show only first row Show all	>Lus10034993 pacid=23181349 polypeptide=Lus10034993 locus=Lus10034993.g ID=Lus10034993.BGIv1.0 annot-version=v1.0 MRTRERGSRGGGGGRPRDRRWSPRYSRSPRYSRSPPRRARSRSRSRDYSPPAKQRDYFRSVSPQERRVSKERAYSRSRSRSLTPRGAPSEGVVRSRSLSR SRSPPRRSRSAANHDEDDYPRERNEDRSPSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10034993 [exp]	0	1
AT4G22320			unknown protein		Lus10032566 [exp]	1.0	0.9220
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10004573 [exp]	1.4	0.8977
					Lus10030724 [exp]	2.2	0.8739
AT1G30320			Remorin family protein (.1)		Lus10023284 [exp]	20.3	0.8801
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10015411 [exp]	20.6	0.8370
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	25.5	0.8216
AT5G48385			FRIGIDA-like protein (.1)		Lus10004131 [exp]	25.6	0.7526
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	26.5	0.8785
AT4G40045			unknown protein		Lus10034155 [exp]	26.6	0.8029
AT5G49600			Protein of unknown function, D...		Lus10017087 [exp]	28.3	0.8406

Compare expression of checked genes

Lus10034993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.