Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62770 72 / 3e-14 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) AT2G40810 69 / 2e-13 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 66 / 3e-12 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036577 [exp] 147 / 3e-41 AT3G62770 610 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10041353 [exp] 146 / 5e-41 AT3G62770 608 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 61 / 3e-10 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10004501 [exp] 59 / 7e-10 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10015178 [exp] 59 / 9e-10 AT3G62770 489 / 4e-172 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10001580 [exp] 0 / 1 AT2G40810 577 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10003694 [exp] 0 / 1 AT2G40810 580 / 0.0 homolog of yeast autophagy 18C (.1.2) Lus10031500 [exp] 0 / 1 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062800 [exp] 69 / 3e-13 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.013G018400 [exp] 52 / 2e-07 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.005G026600 [exp] 45 / 2e-05 AT3G62770 491 / 7e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 0 / 1 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.014G132300 [exp] 0 / 1 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10034995 pacid=23181347 polypeptide=Lus10034995 locus=Lus10034995.g ID=Lus10034995.BGIv1.0 annot-version=v1.0 ATGAGGACGCACAAACCTCCTGATTCAGGCGCCGCCAACATCCTCACCGTCAACATCCCACCGACATCTCACCACCACATCAACGTCTGGACACCAACAA CACCAATGGAAGAACCAAATCACTGCCGCAACATTCTAGCCGTCAAGCAACCAACGCCAACAAACCAAACTCAAAGAACACCAAGAACATTATCAACATC ATTATCAGAAAACCCGATCAAAACCATCATCATCAGAAAACCCAATCAAAGACATGTGTCTCATCGTAGAGCTGTCAGCAAAAAAATATCAAACGGTTTC GGATTATCCTTTGAAATAGGGCAATCGACATCAATAGTCTCGAGGATACAATCATGGCGACTCTTTCTGCTTACTCATCTCCTCCGCCAGCAGGACGGCG ACGAACAACATCTCGACCATCCCCACCCTTACAATTCCCTATCCTGGGTCATACCTCCGGAGCATCACCACCAACCGGATCAGATTGTCCAGTATGCTAG CCCCGTCTCTTCTCTTCCCGAGTCATCGTCGTCCCCTCCCCCTCCTGTTTCTCACCTCCATCTCTTATTCAACCAGGACTCTGGCTGCTTCGCCTCCGGC ACCGATCACGGCTTCCGAATCTACAACTACGATCCCTTCGGGGAGATATTCCGCCGGGACTTCGATCGGCGTGGGCGCGGAATCGGAGTCGTGGAGATGC TTTTCCGCTGTAACATTTTGGCTCTCGTTGGCGGTGGTTATGATTTGGGACGATCATCAGAGTCGATGCATTGGCGAGCTCTCGTTTAG
AA sequence Show only first row Show all	>Lus10034995 pacid=23181347 polypeptide=Lus10034995 locus=Lus10034995.g ID=Lus10034995.BGIv1.0 annot-version=v1.0 MRTHKPPDSGAANILTVNIPPTSHHHINVWTPTTPMEEPNHCRNILAVKQPTPTNQTQRTPRTLSTSLSENPIKTIIIRKPNQRHVSHRRAVSKKISNGF GLSFEIGQSTSIVSRIQSWRLFLLTHLLRQQDGDEQHLDHPHPYNSLSWVIPPEHHHQPDQIVQYASPVSSLPESSSSPPPPVSHLHLLFNQDSGCFASG TDHGFRIYNYDPFGEIFRRDFDRRGRGIGVVEMLFRCNILALVGGGYDLGRSSESMHWRALV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10034995 [exp]	0	1
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10001280 [exp]	3.6	1.0000
					Lus10011061 [exp]	6.6	1.0000
					Lus10022145 [exp]	7.7	1.0000
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10026660 [exp]	11.8	1.0000
					Lus10024550 [exp]	12.0	1.0000
					Lus10034512 [exp]	14.0	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	14.7	1.0000
					Lus10008049 [exp]	15.0	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10036313 [exp]	17.0	1.0000
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10019419 [exp]	17.9	1.0000

Compare expression of checked genes

Lus10034995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.