Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13550 196 / 3e-61 EMB144, COP10, CIN4, FUS9 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) AT2G16740 122 / 2e-33 UBC29 ubiquitin-conjugating enzyme 29 (.1) AT3G08690 117 / 3e-31 ATUBC11, UBC11 ubiquitin-conjugating enzyme 11 (.1.2) AT1G64230 116 / 5e-31 UBC28 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) AT5G53300 115 / 7e-31 UBC10 ubiquitin-conjugating enzyme 10 (.1.2.3.4) AT5G41700 115 / 1e-30 ATUBC8, UBC8 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) AT5G56150 115 / 1e-30 UBC30 ubiquitin-conjugating enzyme 30 (.1.2) AT4G27960 115 / 1e-30 UBC9 ubiquitin conjugating enzyme 9 (.1.2) AT3G08700 106 / 2e-27 UBC12 ubiquitin-conjugating enzyme 12 (.1) AT1G36340 88 / 1e-20 UBC31 ubiquitin-conjugating enzyme 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012931 [exp] 427 / 9e-137 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10028700 [exp] 119 / 5e-32 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10009422 [exp] 119 / 5e-32 AT3G08690 285 / 2e-100 ubiquitin-conjugating enzyme 11 (.1.2) Lus10027846 [exp] 117 / 3e-31 AT1G64230 289 / 3e-102 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10014187 [exp] 116 / 6e-31 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10021385 [exp] 116 / 6e-31 AT1G64230 302 / 1e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10022726 [exp] 116 / 6e-31 AT1G64230 303 / 7e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Lus10005072 [exp] 121 / 5e-30 AT4G27960 291 / 3e-98 ubiquitin conjugating enzyme 9 (.1.2) Lus10032352 [exp] 114 / 5e-30 AT5G53300 302 / 2e-107 ubiquitin-conjugating enzyme 10 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089300 [exp] 184 / 2e-56 AT3G13550 256 / 3e-88 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Potri.019G083800 [exp] 118 / 9e-32 AT5G56150 280 / 1e-98 ubiquitin-conjugating enzyme 30 (.1.2) Potri.004G175000 [exp] 117 / 2e-31 AT5G53300 292 / 2e-103 ubiquitin-conjugating enzyme 10 (.1.2.3.4) Potri.001G471200 [exp] 115 / 1e-30 AT1G64230 292 / 2e-103 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.011G168200 [exp] 115 / 2e-30 AT1G64230 295 / 1e-104 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.006G110200 [exp] 114 / 2e-30 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.003G136200 [exp] 114 / 2e-30 AT1G64230 304 / 4e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.019G131400 [exp] 114 / 2e-30 AT5G41700 304 / 4e-108 ARABIDOPSIS THALIANA UBIQUITIN CONJUGATING ENZYME 8, ubiquitin conjugating enzyme 8 (.1.2.3.4.5) Potri.016G138900 [exp] 114 / 2e-30 AT1G64230 304 / 3e-108 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5) Potri.001G094900 [exp] 113 / 5e-30 AT1G64230 302 / 2e-107 ubiquitin-conjugating enzyme 28 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0208 [flax] [poplar] UBC PF00179 [flax] [poplar] UQ_con Ubiquitin-conjugating enzyme
Representative CDS sequence Show only first row Show all	>Lus10034996 pacid=23181362 polypeptide=Lus10034996 locus=Lus10034996.g ID=Lus10034996.BGIv1.0 annot-version=v1.0 ATGTCTAGGATGTCAGGCCGTGATGTCCCGATGCCGGGGAGCGGCGGACCATCATCATCGGCGGCGAACAATTCTTGGGTGTCGCCAACTTCAGTCTCGA CGTCAGGGAAGAGGATACAGAGAGAAATAACAGAATTCAATATGGATCCACCGCCTGATTGTTCTGCGGGTCCAAAGGGTGACAATCTCTACCATTGGAT CTCCACAATTATTGGACCTTCAGTCTCTACCTTATCCAATCATCCCTTTCTTCGAGACAACCGTTCGTTATGCAAAATGGTGGTTGCTTGTCTGCTGAAA GGTCTTTATTCGAGTTATCACGCCAGTGCTGTCTTCATATGTGGAACGCCATATGAAGGAGGTATATTTTTCCTAGACATAATATTTCCTAGTGACTATC CATTCAAACCGCCAAAGATGGTGTTCAAGACTCGGATTTACCATTGTAATGTTGATTCTGCTGGGAACCTAATTATAGACATGTTGAAAGATAGCTGGAG TCCGGCTCTTACAATCACTAAAGTGTTACTTGCAACAATTCTGAAATCCCAGGGATTGCACGCTTGTATTTGGCAGATAGGCCCAAACATGACGAGTTGG CTGCAGAGTGGACTCGGCGGTTTGCGAAAGTTATCTTGCTGTCGAGTAATATGGCAAGATAACACTCTCTTCTTCATACTACCAGTCCCCAACAAAGCCA AAGCCTTTGCAATCAAATTCAAACACAATCTGAGTAAACGGAATTCAGAAGCACCAGGTGAAATGGAGATGATAAAAAATGGGATATCTGAAATAGGGGT CCAGGACATAATCAGTGCAGGTCTTTCCCTTGAGGAGGCGACAAGCTTCCACAGCAAGCTCAAAGATGCCATCTTAATATCAAATGGGCTTAGCTCTGAA CCTGCAGACTCGAGAGAGTTATGGCGGAGGGTGGTGGTCGGAAACTGCTCCAGCCATGGCATCCCCATAAGCTCCACCAGCTGGTTTACTATTCTTGTTG TGCTAATTGGGATTCCTCAACTCGTGGACCTCCTTATTGGTTTCTTCTCTATCTACAAGGTTGCTTCTCTTCTCAAATTCGTATGTAATGTGCGTGTTAG GGATGAGTCAAAGCTGGGACGTACAATTGAAACATATGGATCCAAGCTGTTTGGAACTTCTTACAAGGACCCGATTACAAGTTTTGGTCTCTTTCAAAAA CCAGCAGCTTCTCGACAGCTTTATTCTGATGAGTCTCGCCCAGATCCTCCCTTGGAGTAG
AA sequence Show only first row Show all	>Lus10034996 pacid=23181362 polypeptide=Lus10034996 locus=Lus10034996.g ID=Lus10034996.BGIv1.0 annot-version=v1.0 MSRMSGRDVPMPGSGGPSSSAANNSWVSPTSVSTSGKRIQREITEFNMDPPPDCSAGPKGDNLYHWISTIIGPSVSTLSNHPFLRDNRSLCKMVVACLLK GLYSSYHASAVFICGTPYEGGIFFLDIIFPSDYPFKPPKMVFKTRIYHCNVDSAGNLIIDMLKDSWSPALTITKVLLATILKSQGLHACIWQIGPNMTSW LQSGLGGLRKLSCCRVIWQDNTLFFILPVPNKAKAFAIKFKHNLSKRNSEAPGEMEMIKNGISEIGVQDIISAGLSLEEATSFHSKLKDAILISNGLSSE PADSRELWRRVVVGNCSSHGIPISSTSWFTILVVLIGIPQLVDLLIGFFSIYKVASLLKFVCNVRVRDESKLGRTIETYGSKLFGTSYKDPITSFGLFQK PAASRQLYSDESRPDPPLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Lus10034996 [exp]	0	1
AT3G46620			zinc finger (C3HC4-type RING f...		Lus10012376 [exp]	8.4	0.7604
AT1G07400			HSP20-like chaperones superfam...		Lus10022604 [exp]	12.5	0.8086
AT1G69550			disease resistance protein (TI...		Lus10005376 [exp]	16.1	0.7845
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015751 [exp]	17.7	0.8012
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	17.9	0.7724
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	18.7	0.7993
AT1G18060			unknown protein		Lus10012667 [exp]	21.5	0.7518
AT2G40435			unknown protein		Lus10029251 [exp]	26.3	0.7698
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Lus10036094 [exp]	31.0	0.7779
					Lus10008005 [exp]	32.3	0.7182

Compare expression of checked genes

Lus10034996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.