Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55320 1004 / 0 AAE18 acyl-activating enzyme 18 (.1.2) AT5G23050 674 / 0 AAE17 acyl-activating enzyme 17 (.1) AT5G36880 112 / 2e-25 ACS acetyl-CoA synthetase (.1.2) AT2G47240 47 / 6e-05 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G16910 45 / 0.0001 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT1G66120 45 / 0.0002 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 43 / 0.0006 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012931 [exp] 1441 / 0 AT1G55320 1008 / 0.0 acyl-activating enzyme 18 (.1.2) Lus10038966 [exp] 693 / 0 AT5G23050 1043 / 0.0 acyl-activating enzyme 17 (.1) Lus10027257 [exp] 691 / 0 AT5G23050 1044 / 0.0 acyl-activating enzyme 17 (.1) Lus10012595 [exp] 127 / 6e-30 AT5G36880 1246 / 0.0 acetyl-CoA synthetase (.1.2) Lus10041499 [exp] 124 / 3e-29 AT5G36880 1241 / 0.0 acetyl-CoA synthetase (.1.2) Lus10034996 [exp] 118 / 3e-28 AT3G13550 202 / 1e-63 FUSCA 9, EMBRYO DEFECTIVE 144, CONSTITUTIVE PHOTOMORPHOGENIC 10, CYTOKININ-INSENSITIVE 4, Ubiquitin-conjugating enzyme family protein (.1.2) Lus10013831 [exp] 55 / 2e-07 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 50 / 4e-06 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10028375 [exp] 44 / 0.0005 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006700 [exp] 1141 / 0 AT1G55320 1078 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.001G006600 [exp] 1059 / 0 AT1G55320 1041 / 0.0 acyl-activating enzyme 18 (.1.2) Potri.015G056000 [exp] 716 / 0 AT5G23050 1054 / 0.0 acyl-activating enzyme 17 (.1) Potri.014G140900 [exp] 124 / 3e-29 AT5G36880 1191 / 0.0 acetyl-CoA synthetase (.1.2) Potri.005G250700 [exp] 61 / 2e-09 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.012G095000 [exp] 60 / 4e-09 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 49 / 1e-05 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G049500 [exp] 49 / 1e-05 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.016G034800 [exp] 44 / 0.0005 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G138451 [exp] 44 / 0.0006 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10034997 pacid=23181361 polypeptide=Lus10034997 locus=Lus10034997.g ID=Lus10034997.BGIv1.0 annot-version=v1.0 ATGGAGTTGATGAGAAATGGGATATCTGAAATAGAGGTCCAGGACATAATCAGTGCAGGTCTCTCCCTTGATGAGGCCACGAGACTCCACGGCAAGCTCA AAGATGCCATCTTTTCAGCAAATGGGTTTATCTCTGAACCTGCAGATTTATGGCGGAGGGTGGTGGTCGGAAAAGTGCTCCAGCCGTGGCATCCCCATAA GATCCACCAGCTGGTTTACTATTCTTGTTATGCTAATTGGGATTCCTCAGCTCGTGGACCTCCTCCTTATTGGTTTCCTTCTCCTGATGAGTCAATGCGT TCAAACTTGGGACTTACAATGGAAACATATGGATCCAAGCTTTTTGGGACTTCTTACAAGGACCCCATTACAAGCTTTGAGCTCTTTCAAAAATTTAGTG TTAAATACCCAGAGGTTTATTGGTCCATCGTGCTACAACAGCTTTCAGTGGCTTTCCATGAAAACCCAAAATGCATTCTTGACGCTAGTGACGAGTCAAA ACCCGGTGGAGCATGGCTACCAAGTGCAGTTATGAATATTGCTAATTGTTGTTTGCAGCCAGTAAGTCATCCTATGAAAAATGACAACAGTATAGCAATT GTATGGAGGGATGAAACTGATTCCTCTAACATTAACCAATTGACATTGAAACAACTCCGACAACAAGTAATGTTGGTTGCAAATGCTCTAGATGCAACAT TTGTTAAAGGAGACACCATTGCCATTGACATGCCGATGACAGTTCATTCAGTTATCATCTACTTGGCCATTGTATTGGCTGGATATGTTGTAGTATCAAT AGCTGACAGCTTTGCTGCTAAAGAAATTGCATCACGTTTGCGCATCTCCAATGCAAAGGGTATCTTCACTCAGGATTTCATAGTTAGAGGAGGTCGGAAG TTTCCATTGTACAGTCGTGTTAAAGAAGCAAAGCCACATAAAGCTATTGTGTTGCCTGCCGTTGGAAATGGTGTTGGAATTCAGTTACGAAAGCAGGATC TTTCGTGGGACGACTTTCTTTCTAGTGCCAACCACCTGGAAAGACCAAATGTTTACTCTCCTGTTTATCAACCAGCTGATTCAACGACAAACATTCTGTT TTCATCCGGAACTACAGGAGACCCTAAAGCTATCGTATGGACGCATCTTTCACCAATTCGATGCAGTAGCGATGCTTGGGCTAACATTGATCTTCGGGTT GGCGATGTCTACTGTTGGCCTACAAATTTAGGTTGGGTAATGGGACCCATTTTGCTCTATTCTTGCTTCTTAACTGGTGCAACTCTTGCTCTCTTTCATG GATCTCCCCTTGGCCGCGAGTTTGGAAAATTTGTTCAGGATGCCGGTGTTAGCGTATTAGGAACTGTTCCAAGCTTAGTGAAGACTTGGAAGAACACCAA CTGCATGGATAGATTAAACTGGACAAAGATAAGGTGCTTTTGTTCCACTGGGGAAACTTCAAACGTTGACGATGACCTTTGGCTCTCTTCGAAATCATAT TACAAACCCATTATTGAGTGTTGTGGAGGAACGGAACTTGCATCATCCTACATCCAAGGCAGCCTGCTACAGCCACAGGCTTTTGGGCGCTTTAGCACTG CGGGGATGACCACAGGTTTAGTCATCCTTGATGAAGAAGGGATTCCATATCGAGATGACGAACCTTGTGTAGGTGAAGTGGGATTGTTTCCTTTGTACCT AGGTGCATCCGATCGACTTCTGAATGCTGATCACCATCAAGTTTACTTCGAGGGAATGCCCATTGTCAATGGAATGCAACTAAGGAGACATGGTGACATT CTGAAGAGGACGGTTGGAGGCTACTTCATCGTGCAGGGCCGCGCAGATGATACCATGAATCTCGGAGGGATTAAGACTAGTTCAGTGGAGATAGAGTGGG TATGCGATCGAGCTGATGAAAGCATTGTGGAGACAGCGGCGGTGAGTGTGGCACCAGTGGGTGGTGGTCCAGAAGTGTTGGTGATATTTGTGGTAGTGAA GAAAGGGTATAAAGGGGAAGCAGAGCAGTTGAGAGCTAAGTTCTCAAAGGCAATCCAGATTAATCTCAACCCACTATTCAAGGTTGGGCATGTTAAGATT GTAGGAGAGTTTCCCAGAACGGCCTCCAATAAGGTGCTGAGGCGAGTTCTGAGGGACCAAATGAAGCAGCAGCTTCATGGACCAAGCAAGATATAG
AA sequence Show only first row Show all	>Lus10034997 pacid=23181361 polypeptide=Lus10034997 locus=Lus10034997.g ID=Lus10034997.BGIv1.0 annot-version=v1.0 MELMRNGISEIEVQDIISAGLSLDEATRLHGKLKDAIFSANGFISEPADLWRRVVVGKVLQPWHPHKIHQLVYYSCYANWDSSARGPPPYWFPSPDESMR SNLGLTMETYGSKLFGTSYKDPITSFELFQKFSVKYPEVYWSIVLQQLSVAFHENPKCILDASDESKPGGAWLPSAVMNIANCCLQPVSHPMKNDNSIAI VWRDETDSSNINQLTLKQLRQQVMLVANALDATFVKGDTIAIDMPMTVHSVIIYLAIVLAGYVVVSIADSFAAKEIASRLRISNAKGIFTQDFIVRGGRK FPLYSRVKEAKPHKAIVLPAVGNGVGIQLRKQDLSWDDFLSSANHLERPNVYSPVYQPADSTTNILFSSGTTGDPKAIVWTHLSPIRCSSDAWANIDLRV GDVYCWPTNLGWVMGPILLYSCFLTGATLALFHGSPLGREFGKFVQDAGVSVLGTVPSLVKTWKNTNCMDRLNWTKIRCFCSTGETSNVDDDLWLSSKSY YKPIIECCGGTELASSYIQGSLLQPQAFGRFSTAGMTTGLVILDEEGIPYRDDEPCVGEVGLFPLYLGASDRLLNADHHQVYFEGMPIVNGMQLRRHGDI LKRTVGGYFIVQGRADDTMNLGGIKTSSVEIEWVCDRADESIVETAAVSVAPVGGGPEVLVIFVVVKKGYKGEAEQLRAKFSKAIQINLNPLFKVGHVKI VGEFPRTASNKVLRRVLRDQMKQQLHGPSKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10034997 [exp]	0	1
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	1.0	0.8784
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10004821 [exp]	4.0	0.8759
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10032478 [exp]	5.8	0.8252
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	6.3	0.8426
AT3G22260			Cysteine proteinases superfami...		Lus10027312 [exp]	8.7	0.8226
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	9.9	0.8290
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	15.3	0.8001
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10014715 [exp]	17.7	0.8417
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	18.1	0.8380
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Lus10042975 [exp]	20.6	0.7628

Compare expression of checked genes

Lus10034997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.