Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56610 246 / 3e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G35680 240 / 1e-78 Phosphotyrosine protein phosphatases superfamily protein (.1) AT3G06110 44 / 3e-05 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G23610 44 / 3e-05 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012928 [exp] 387 / 5e-137 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10004376 [exp] 238 / 1e-77 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10040174 [exp] 237 / 2e-77 AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10021940 [exp] 52 / 7e-08 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 44 / 1e-05 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10000921 [exp] 42 / 0.0003 AT2G04550 322 / 1e-111 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Lus10002263 [exp] 41 / 0.0005 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154700 [exp] 253 / 2e-83 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G045500 [exp] 248 / 9e-82 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.003G080000 [exp] 244 / 2e-80 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 242 / 2e-79 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 44 / 2e-05 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.014G160500 [exp] 42 / 0.0002 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10034998 pacid=23181356 polypeptide=Lus10034998 locus=Lus10034998.g ID=Lus10034998.BGIv1.0 annot-version=v1.0 ATGAAGATTGAGGAGTTGGACGATCTGGAGTGCAATCTTCAGAGTAGAGAAGATGACAGAATCTACAAGAAGCAGAAGCAGCTGCAGATGGTTAGAGTTG ACGCCAAGAGAGCGCTATTTGGAGTGGGAGCTCGGGTTCTTTTCTACCCCACGCTTTTCTATAACGTGTTTAGGAGCAAAATTCAAACCGAGTTCCGATG GTGGGACGAAGTTGACCAGTATCTATTGCTTGGTGCTGTCCCGTTTCCGAAGGATGTTCCCTGGTTAAAGAAGCTTGGTGTTGGTGGAGTCATCACGCTC AATGAACCATACGAGACCTTGGTCCCATCATCCTTGTATCATGTATATGGGATTGACCATCTTCTAAGTCTGACAAGGGATTATTTATTTGCCCCATCAT TTGCAGATATTGGGAATGCACTGTGTTGTAAAACTACCTATGTTCACTGTAAAGCTGGACGTGGACCGAGCACTACCATTGTGCTTTGTTATTTGGTAAA ATATAAGCAGATGACACCAGCTGCCGCCCTAGATTATGTGAGGTCTAGAAGACCTCGAGTGTTGCTAGCTCCATCGCAATGGAGGCTGTTCAAGAATTCA GCAGACGCCAGATCACCACCACCACACTATCTCCCTCAGGGGATTAAGTTCTCATTACCAAAGCTGATCTTGAAGGCTAGCATAGGCTCTCTGAGTATAG TGCTACTGGTCTTTGGCGTCTCCGGACCAGTTAGTGGGCGAATGACTGAGGCACGTGCATGCTAA
AA sequence Show only first row Show all	>Lus10034998 pacid=23181356 polypeptide=Lus10034998 locus=Lus10034998.g ID=Lus10034998.BGIv1.0 annot-version=v1.0 MKIEELDDLECNLQSREDDRIYKKQKQLQMVRVDAKRALFGVGARVLFYPTLFYNVFRSKIQTEFRWWDEVDQYLLLGAVPFPKDVPWLKKLGVGGVITL NEPYETLVPSSLYHVYGIDHLLSLTRDYLFAPSFADIGNALCCKTTYVHCKAGRGPSTTIVLCYLVKYKQMTPAAALDYVRSRRPRVLLAPSQWRLFKNS ADARSPPPHYLPQGIKFSLPKLILKASIGSLSIVLLVFGVSGPVSGRMTEARAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56610			Phosphotyrosine protein phosph...		Lus10034998 [exp]	0	1
AT3G23940			dehydratase family (.1.2)		Lus10032617 [exp]	1.0	0.9484
					Lus10004996 [exp]	6.9	0.9356
					Lus10003285 [exp]	8.5	0.9356
					Lus10000363 [exp]	9.8	0.9356
AT4G30880			Bifunctional inhibitor/lipid-t...		Lus10019770 [exp]	11.0	0.9356
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	12.0	0.9356
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	13.0	0.9356
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	13.9	0.9356
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10033054 [exp]	14.1	0.7739
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	14.7	0.9356

Compare expression of checked genes

Lus10034998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.