Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 812 / 0 PFK3 phosphofructokinase 3 (.1) AT5G56630 793 / 0 PFK7 phosphofructokinase 7 (.1) AT4G29220 741 / 0 PFK1 phosphofructokinase 1 (.1) AT4G32840 733 / 0 PFK6 phosphofructokinase 6 (.1) AT5G61580 687 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 473 / 3e-164 PFK2 phosphofructokinase 2 (.1) AT2G22480 412 / 5e-139 PFK5 phosphofructokinase 5 (.1) AT4G04040 74 / 9e-14 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G20950 72 / 6e-13 Phosphofructokinase family protein (.1) AT1G12000 71 / 8e-13 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043044 [exp] 920 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 917 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 740 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 719 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 504 / 3e-176 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 401 / 6e-135 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 398 / 1e-133 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 186 / 2e-56 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10012925 [exp] 84 / 8e-17 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 825 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 811 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 699 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 520 / 0 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 399 / 2e-138 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 385 / 1e-128 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 318 / 7e-107 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 184 / 1e-55 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 86 / 9e-21 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 76 / 4e-14 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10035001 pacid=23181409 polypeptide=Lus10035001 locus=Lus10035001.g ID=Lus10035001.BGIv1.0 annot-version=v1.0 ATGGCATCTCAAAAGATTAACGACAGTGCTAGCACCGATGTTAGTGCCACAAGCAACCACCGTTTCTCTACAAGCCTCTTTGAGCCAAAGATCCTCAATG GAGACTATGGCTATGTTCTTGAAGATGTTCCTCATTTGACTGATTACCTTCCTCATCTTCATACGTATCCCAATCCTCTACAAGATAATCCTGCTTACTC TGTTGTGAAACAATACTTCGTCGACGTGGATGATACTGTTCCTCAGCGGATTGTTGTACGTAAGGATAGTCGGAGAGGCATCCATTTCCGTCGTGCTGGA CCTCGACAAAAGGTTTACTTCGAGTCCGATGATGTGCATGCATGTATAGTGACATGCGGTGGTCTCTGCCCTGGGCTCAATACTGTAATTAGAGAGATCG TTTCAACCTTGTATTCTATGTATGGTGTGAAGAGAGTGCTTGGGATTGATGGGGGATACAGGGGATTCTATGCTCGGAACACAATAAGCATGACCCCAAA ACTGGTGAACGATATACACAAACGCGGTGGAACCATTCTTGGGACTTCACGAGGAGGTCATGATACTCTAAAGATTGTTGACAGCATTCAGGACAGGGGT ATTAACCAGGTCTACATAATTGGAGGTGATGGGACGCAGAAAGGGGCTTCACTTATATACGAGGAAGTTAGAAGGCGGGGGCTCAAGGTTGTTGTTGCCG GCATCCCTAAAACAATTGATAATGACATTACGGTAATTGACAAATCATTTGGGTTTGACACTGCTGTTGAGGAGGCTCAACGTGCTATTAATGCTGCACA TGTGGAAGCTCAAAGTGCCGAGAATGGCATTGGTCTTGTCAAGTTAATGGGTCGTTATAGTGGGTTTATTGCAATGTTTGCTACTCTTGCAAGCCGAGAT GTGGATTGTTGCCTAATTCCAGAATCACCCTTCTACCTAAAAGGGGAAGGTGGACTTCTTGAGTTCGTGGAGAAAAGGCTTAAGGAAAGTGGACATATGG TTATTGTGATAGCTGAAGGTGCTGGACAAGAGCTATTTTCAGAGAGTAAACTAATGACTGATGCTTCAGGAAATAAACTTCTCCAGGACGTGGGGTTGTG GTTATCGCAAAACATCAAGGATTATTGCAAAACGAAAAAGATGACTATCAACCTTAAATATATAGATCCCACATATATGATTCGAGCCATTCCAAGTAAT GCATCTGACAATGTATATTGTACACTGCTTGCTCAAAGTTGTGTTCATGGTGCAATGGCTGGATACACTGGCTTTACTTCTGGTCTTGTCAATGGCCGCC AAACATACATACCATTTTATCGAATCATCGAGAAACAAAACAGAGTGATCATAACAGATAGGATGTGGGCTAGGCTTTTGTCATCAACAAACCAACCAAG CTTTATGTGTCCTAAACTTGTGGAAGAGAAGAGAAAGGAAATGCAAACTAAACCAGAGGCACAACCCTCAGGACAATTGATGGACGATGGAAACACTGGC GCTGACAAAAAGGCCGTAAACAAAGAGGTCAGGACATGA
AA sequence Show only first row Show all	>Lus10035001 pacid=23181409 polypeptide=Lus10035001 locus=Lus10035001.g ID=Lus10035001.BGIv1.0 annot-version=v1.0 MASQKINDSASTDVSATSNHRFSTSLFEPKILNGDYGYVLEDVPHLTDYLPHLHTYPNPLQDNPAYSVVKQYFVDVDDTVPQRIVVRKDSRRGIHFRRAG PRQKVYFESDDVHACIVTCGGLCPGLNTVIREIVSTLYSMYGVKRVLGIDGGYRGFYARNTISMTPKLVNDIHKRGGTILGTSRGGHDTLKIVDSIQDRG INQVYIIGGDGTQKGASLIYEEVRRRGLKVVVAGIPKTIDNDITVIDKSFGFDTAVEEAQRAINAAHVEAQSAENGIGLVKLMGRYSGFIAMFATLASRD VDCCLIPESPFYLKGEGGLLEFVEKRLKESGHMVIVIAEGAGQELFSESKLMTDASGNKLLQDVGLWLSQNIKDYCKTKKMTINLKYIDPTYMIRAIPSN ASDNVYCTLLAQSCVHGAMAGYTGFTSGLVNGRQTYIPFYRIIEKQNRVIITDRMWARLLSSTNQPSFMCPKLVEEKRKEMQTKPEAQPSGQLMDDGNTG ADKKAVNKEVRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10035001 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10003227 [exp]	2.8	0.7236
AT1G23980			RING/U-box superfamily protein...		Lus10022223 [exp]	4.9	0.6752
					Lus10004507 [exp]	5.4	0.7497
AT2G27035		AtENODL20	early nodulin-like protein 20 ...		Lus10025536 [exp]	8.4	0.6629
AT1G69630			F-box/RNI-like superfamily pro...		Lus10031499 [exp]	11.8	0.6791
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	14.3	0.6836
					Lus10026021 [exp]	16.6	0.6506
AT3G23130	C2H2ZnF	FLO10, FON1, SU...	SUPERMAN, FLORAL ORGAN NUMBER ...		Lus10022206 [exp]	18.5	0.6620
					Lus10000351 [exp]	19.7	0.6606
					Lus10002886 [exp]	20.7	0.6606

Compare expression of checked genes

Lus10035001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.