Gene [FLAX] | FIBexDB

Lus10035002 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10010518 [exp]	121 / 2e-35	ND	/
Lus10040056 [exp]	85 / 2e-21	AT5G28823	41 / 2e-04	unknown protein
Lus10031757 [exp]	81 / 1e-19	ND	39 / 0.002
Lus10008146 [exp]	69 / 1e-14	ND	/
Lus10035493 [exp]	70 / 2e-14	AT4G11450	462 / 2e-151	Protein of unknown function (DUF3527) (.1)
Lus10026443 [exp]	64 / 4e-13	ND	/
Lus10001304 [exp]	57 / 6e-10	AT5G08020	40 / 0.006	ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Lus10032697 [exp]	52 / 1e-08	ND	/
Lus10004792 [exp]	50 / 2e-07	ND	/

Poplar homologues

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No hit found

PFAM info

Representative CDS sequence

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>Lus10035002 pacid=23181434 polypeptide=Lus10035002 locus=Lus10035002.g ID=Lus10035002.BGIv1.0 annot-version=v1.0

ATGATCAATCGTTTGTGGGGATATGAACGAGAGGTTGTGCTTTTTACGATTTCAGCAGGATTCTTCCTCATCGAGTTTCCGTCTGAGAAACTTTATGACT

GCGTCTTGACCCGTGCCTGGCATATTCATCACTTTGTCATGGTTTTGAGGAAATGGAAATCGGGTATTGCCCCTCTGGATCTTGAGGTGAAGGATGTGCC

CACTTGGATTAAACGTCATGATGTTCCTCTTAAGCTCTTAATCAATACTGCAATTGAATGGATGAGTCGTACTTATGATCAGCGTATGGAGAAGGCTAAA

GAGCAGATTAAAGTATGGAAGCCAAAGGTAAATCCAGATCAAGACAATTCTGAATCTTTGAAGCTTGTTGAAAAGGTGACTGTTGTTGAAGCCACTGTTT

GTGTTGATGCGGTGGTGAGTCAACCAAATGAAGTGATTGGCACTCAATAG

AA sequence

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>Lus10035002 pacid=23181434 polypeptide=Lus10035002 locus=Lus10035002.g ID=Lus10035002.BGIv1.0 annot-version=v1.0

MINRLWGYEREVVLFTISAGFFLIEFPSEKLYDCVLTRAWHIHHFVMVLRKWKSGIAPLDLEVKDVPTWIKRHDVPLKLLINTAIEWMSRTYDQRMEKAK

EQIKVWKPKVNPDQDNSESLKLVEKVTVVEATVCVDAVVSQPNEVIGTQ

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01050			zinc ion binding;nucleic acid ...		Lus10035002 [exp]	0	1

Lus10035002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.