Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29210 747 / 0 GGT4, GGT3 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2) AT4G39640 570 / 0 GGT1 gamma-glutamyl transpeptidase 1 (.1.2) AT4G39650 562 / 0 GGT2 gamma-glutamyl transpeptidase 2 (.1) AT1G69820 236 / 2e-74 GGT4, GGT3 gamma-glutamyl transpeptidase 4, gamma-glutamyl transpeptidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012925 [exp] 944 / 0 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069450 [exp] 839 / 0 AT4G29210 789 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2) Potri.005G082800 [exp] 606 / 0 AT4G39640 786 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2) Potri.001G333400 [exp] 588 / 0 AT4G39640 768 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01019 [flax] [poplar] G_glu_transpept Gamma-glutamyltranspeptidase
Representative CDS sequence Show only first row Show all	>Lus10035003 pacid=23181368 polypeptide=Lus10035003 locus=Lus10035003.g ID=Lus10035003.BGIv1.0 annot-version=v1.0 ATGTCCAGAAGACAGAGCTCCCAAATTCCACTTCTGTGTAGTGATGATGTTTCATCTCCAGAAAAAGGCCACTCTGGTAGAAGAAAAGCTCTCTTCCTGC TCCTTACTTTTGTGGCAATTGCAGTAGCTGTGGGAGTAATCTATGTTGGGGATGTAAATCATTTGTCGTTGAGAAGGGAAAACAAGGTGATTATTCATCG GAAAAACAAGGTTACTGAAAATGCAGAAATTAAATCGGAGGATGGAGTGGTTGCAGCAGATGACTCAAGGTGTTCTCAGATTGGTGCTTCAGTTCTCAGA CAAGGAGGCCACGCTGTTGACTCAGCAGTCGCAACTGCAGTCTGCCTTGGAGTTGTTAACGCCATGGCAAGTGGAATTGGAGGTGGAGGTTTCATGGTAG TCAGGTCTTCGTCTTCCAGTTCTAAAGTTCAAGCTTTCGACATGAGGGAAACTGCCCCTTCTGCTGCTACAAAGAATATGTATGCAAATGACATGGAAGC CAAGTACTTAGGTCCGCTGTCAATGGGGGTTCCTGGTGAGATAGCGGGGATTTACGAAGCTTGGTTGCAGTATGGTCGTCTACCATGGAATGCGTTACTC CAACCTGCAATTAAACTTGCCAAGGATGGCTTTGTGGTTGCACCTTACCTGGCCAAATCCATAGTCGAGACCACGAAAATCCTTAACGACCCTGGATTGC AAAAGGTGTATGCGCCCAATGGGAAGCTGTTGAAAGCTGGTGACATATGCTACAATGTAGCGCTAGCTCGCACATTGGAAGCCATTGCGGAGCACGGGCC AGAGGTTTTCTACAATGGCAGTGTCGGCGAGAATCTGGTGAAGGATGTTAGGGCAGCTGGAGGGATAATCAAAATGGAAGATTTGAACAACTACAAGGTC AGAGTCACTGATGCAGTGGCTGTGGATGCAATGGGTTACACCATATACGGAATGCCTTCTCCTTCCAGCGGGACTCTTGGAATGTCTCTGGTGATGAACA TCTTCAAAAGCTATGGAAGTCCTAATGCTGCAAATGGTGGCATTGGTCTGCATCGCTTGATCGAATCACTGAAGCACATGTTTGCCCTCAGGATGAATTT GGGAGATCCTGATTTTGTTGATATCAGTGAAGTTGAAGCTCAGATGCTTTCTCCAGCTTTTGCTGAGAAGATTCATAAACTGATATTTGATAACACTACC TTCCCTCCGGAATATTACATGCACAAGTTGTGGAGTCAGTTAAGAGACCATGGAACCAGCCATTTTTGCATTGTTGATGCAGAACGAAATGCTGTATCAA TGACATCAACTGTGAACTATGGCTTCGGAGCTGGGTTGCTATCTCCTTCAACTGGGATTGTTATTAACAATGAGATGGGCGATTTCTCAGCTCCAACAGA GATATCCTCTGATCATCTCCCTCCATCTCCTGCCAATTTCATTGAACCAAATAAACGACCCTTGTCTTCCATGGCCCCAATCATCATTACAAAGGGAAAT CAACTGGCTGGAGTCCTGGGAGGGAGTGGTGGCTTGTACATTATTCCGGCAATAGTAGAAGTTTTCCTAAACCACTTTGTGTTTGGGATGGAACCTTTGC ATGCAGTCCTTAGCCCTAGGGTTTACCATGATTTGATACCAAATGTTGTCAAGTACGAGAACTGGACATTAATATGCGGGGATCACATAGAACTTGCAGA TGAAAGGAAGGCTTTCTTGAAACAAAGAGGTCACCAGTTAAGTGCCAATGCAGGAGGAGCTATAGTTCAGCTGGTTGTTCAATCTATACAGAACCCTACC GCTCCGGGCCGAAAGACGAAAGGAGGCAGCAACACGGCAGTTCAGGGAATGCTAACTGCAGTAAGTGATCTGCGCAAGGATGGCAGGCCAGCAGGTGTCT GA
AA sequence Show only first row Show all	>Lus10035003 pacid=23181368 polypeptide=Lus10035003 locus=Lus10035003.g ID=Lus10035003.BGIv1.0 annot-version=v1.0 MSRRQSSQIPLLCSDDVSSPEKGHSGRRKALFLLLTFVAIAVAVGVIYVGDVNHLSLRRENKVIIHRKNKVTENAEIKSEDGVVAADDSRCSQIGASVLR QGGHAVDSAVATAVCLGVVNAMASGIGGGGFMVVRSSSSSSKVQAFDMRETAPSAATKNMYANDMEAKYLGPLSMGVPGEIAGIYEAWLQYGRLPWNALL QPAIKLAKDGFVVAPYLAKSIVETTKILNDPGLQKVYAPNGKLLKAGDICYNVALARTLEAIAEHGPEVFYNGSVGENLVKDVRAAGGIIKMEDLNNYKV RVTDAVAVDAMGYTIYGMPSPSSGTLGMSLVMNIFKSYGSPNAANGGIGLHRLIESLKHMFALRMNLGDPDFVDISEVEAQMLSPAFAEKIHKLIFDNTT FPPEYYMHKLWSQLRDHGTSHFCIVDAERNAVSMTSTVNYGFGAGLLSPSTGIVINNEMGDFSAPTEISSDHLPPSPANFIEPNKRPLSSMAPIIITKGN QLAGVLGGSGGLYIIPAIVEVFLNHFVFGMEPLHAVLSPRVYHDLIPNVVKYENWTLICGDHIELADERKAFLKQRGHQLSANAGGAIVQLVVQSIQNPT APGRKTKGGSNTAVQGMLTAVSDLRKDGRPAGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	0	1
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	4.2	0.7911
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	5.7	0.8041
AT3G44880		PAO, LLS1, ACD1	LETHAL LEAF-SPOT 1 HOMOLOG, AC...		Lus10041348 [exp]	7.3	0.7797
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	7.4	0.7524
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	14.7	0.7603
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10034750 [exp]	16.2	0.7771
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	16.3	0.7666
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Lus10025824 [exp]	16.4	0.7528
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	17.7	0.7277
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	18.2	0.7746

Compare expression of checked genes

Lus10035003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.