Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19790 263 / 4e-92 SNARE-like superfamily protein (.1) AT1G47830 119 / 2e-35 SNARE-like superfamily protein (.1) AT2G17380 117 / 2e-34 AP19 associated protein 19 (.1) AT4G35410 117 / 2e-34 Clathrin adaptor complex small chain family protein (.1.2) AT3G50860 107 / 1e-30 Clathrin adaptor complex small chain family protein (.1) AT1G60970 39 / 0.0004 SNARE-like superfamily protein (.1) AT4G08520 39 / 0.0004 SNARE-like superfamily protein (.1) AT3G09800 38 / 0.001 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012924 [exp] 276 / 1e-97 AT2G19790 280 / 6e-99 SNARE-like superfamily protein (.1) Lus10024337 [exp] 116 / 4e-33 AT1G47830 274 / 5e-95 SNARE-like superfamily protein (.1) Lus10026316 [exp] 112 / 3e-32 AT2G17380 297 / 7e-105 associated protein 19 (.1) Lus10042352 [exp] 112 / 4e-32 AT2G17380 297 / 3e-104 associated protein 19 (.1) Lus10003641 [exp] 103 / 7e-29 AT4G35410 251 / 8e-87 Clathrin adaptor complex small chain family protein (.1.2) Lus10041742 [exp] 84 / 5e-21 AT3G50860 278 / 6e-97 Clathrin adaptor complex small chain family protein (.1) Lus10024011 [exp] 82 / 3e-20 AT3G50860 215 / 3e-72 Clathrin adaptor complex small chain family protein (.1) Lus10037624 [exp] 43 / 1e-05 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1) Lus10006883 [exp] 43 / 1e-05 AT4G08520 287 / 3e-100 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149100 [exp] 268 / 3e-94 AT2G19790 287 / 1e-101 SNARE-like superfamily protein (.1) Potri.005G238701 [exp] 117 / 1e-34 AT1G47830 275 / 8e-97 SNARE-like superfamily protein (.1) Potri.012G052000 [exp] 117 / 1e-34 AT2G17380 307 / 6e-109 associated protein 19 (.1) Potri.002G022900 [exp] 116 / 2e-34 AT1G47830 278 / 6e-98 SNARE-like superfamily protein (.1) Potri.014G079000 [exp] 115 / 1e-33 AT4G35410 291 / 1e-102 Clathrin adaptor complex small chain family protein (.1.2) Potri.002G001800 [exp] 113 / 2e-32 AT2G17380 278 / 3e-97 associated protein 19 (.1) Potri.007G025400 [exp] 100 / 1e-27 AT3G50860 296 / 1e-104 Clathrin adaptor complex small chain family protein (.1) Potri.005G122900 [exp] 96 / 9e-26 AT3G50860 286 / 1e-100 Clathrin adaptor complex small chain family protein (.1) Potri.003G043200 [exp] 38 / 0.0006 AT1G60970 288 / 4e-101 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF01217 [flax] [poplar] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Lus10035004 pacid=23181338 polypeptide=Lus10035004 locus=Lus10035004.g ID=Lus10035004.BGIv1.0 annot-version=v1.0 ATGGTGAACAAGCAAGGCCAGACTCGTCTTGCTCAATACTACGAATGGCTCACTCTCGAAGAGCGCCGTGCCATCGAAGGCGAAATCGTCCGCAAGTGCC TCGCCCGCAACGAACAACAGTGTTCCTTCGTTGAGCACCGGAATTACAAGATCGTGTACAGGAGATACGCATCGCTGTTTTTCTTGGTTGGAGTTGGCAA TGACGAGAATGAGCTTGCAATTTTGGAATTCATACATCTGTTAGTGGAAACCATGGACCGTCATTTTGGCAATGTGTGTGAGCTAGACATCATGTTCCAT TTAGAGAAAGCACATTTCATGCTGGAAGAGATGGTCATGAATGGTTGCATTGTTGAGACGAGCAAATCCAACATCCTCATCCCCATACAGTTGATAGAGA AAATGTCCTAA
AA sequence Show only first row Show all	>Lus10035004 pacid=23181338 polypeptide=Lus10035004 locus=Lus10035004.g ID=Lus10035004.BGIv1.0 annot-version=v1.0 MVNKQGQTRLAQYYEWLTLEERRAIEGEIVRKCLARNEQQCSFVEHRNYKIVYRRYASLFFLVGVGNDENELAILEFIHLLVETMDRHFGNVCELDIMFH LEKAHFMLEEMVMNGCIVETSKSNILIPIQLIEKMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19790			SNARE-like superfamily protein...		Lus10035004 [exp]	0	1
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10018238 [exp]	1.4	0.8905
AT5G03460			unknown protein		Lus10023922 [exp]	2.6	0.8967
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10022494 [exp]	4.9	0.8778
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	4.9	0.8659
AT4G26965			NADH:ubiquinone oxidoreductase...		Lus10032642 [exp]	4.9	0.8599
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10028192 [exp]	5.0	0.8758
AT5G11680			unknown protein		Lus10027000 [exp]	11.1	0.8832
AT5G03460			unknown protein		Lus10014419 [exp]	12.0	0.8741
AT1G61780			postsynaptic protein-related (...		Lus10007644 [exp]	15.7	0.8577
AT2G23940			Protein of unknown function (D...		Lus10041903 [exp]	16.4	0.8531

Compare expression of checked genes

Lus10035004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.