Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26260 470 / 3e-168 MIOX4 myo-inositol oxygenase 4 (.1.2) AT2G19800 462 / 3e-165 MIOX2 myo-inositol oxygenase 2 (.1) AT5G56640 457 / 3e-163 MIOX5 myo-inositol oxygenase 5 (.1) AT1G14520 441 / 6e-157 MIOX1 myo-inositol oxygenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012923 [exp] 618 / 0 AT4G26260 489 / 2e-175 myo-inositol oxygenase 4 (.1.2) Lus10006198 [exp] 429 / 5e-152 AT2G19800 452 / 3e-161 myo-inositol oxygenase 2 (.1) Lus10041030 [exp] 429 / 1e-144 AT2G19800 448 / 1e-151 myo-inositol oxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069700 [exp] 499 / 1e-179 AT4G26260 465 / 2e-166 myo-inositol oxygenase 4 (.1.2) Potri.017G100200 [exp] 451 / 1e-160 AT2G19800 482 / 4e-173 myo-inositol oxygenase 2 (.1) Potri.008G144500 [exp] 449 / 6e-160 AT1G14520 514 / 0.0 myo-inositol oxygenase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [flax] [poplar] HD_PDEase PF05153 [flax] [poplar] MIOX Myo-inositol oxygenase
Representative CDS sequence Show only first row Show all	>Lus10035005 pacid=23181438 polypeptide=Lus10035005 locus=Lus10035005.g ID=Lus10035005.BGIv1.0 annot-version=v1.0 ATGACGATCCGTATCGAGCAACCCGCCGACTCTGCTAACACCGCTACATCTCTTCTTGAGGTGGGGAATGAGAAAAATAAAAACAAATTAGTAGGAGAAG AGAAAGAGGAGTTGGTGTTGGATTGTGGGTTTGTGGTGCCAGAGAAGCCCATTGTTTCCAGCAACGAATTTGAAGCTCCTGATATTAACGCCTTTGGCAA TTCATTCAGGAACTACTATGCAGAAAACGAGAGGCAGAAGGCCGTTGAGAATCTCTACAGACAGCAACACTGCACCCAAACATATGATTTCGTGAAGAAG ATGAGGGAAGAGTATGGTAAGCTGGACAAGGGGGAAATGAGCATATGGGAGTGTTGTGAGTTGCTGAACAGTGTGGTGGATGAGAGTGACCCTGACCTTG ATGAGCCTCAAATTCAGCATTTGTTGCAGTCTGCTGAAGCCATTAGGAAGGACTACCCTAATGAGGATTGGCTCCACTTGACTGCTCTTATTCACGATCT GGGGAAGATTCTACTGCTGCCACAGTTTGGGGAGCTCGCACAATGGGCAGTGGTTGGTGACACTTACCCACTTGGTTGTGCTTTTGACCCTTCCAATGTT CACCACAAGTATTTTGCCGAGAATCCTGATACAAAGAACCCAGCCTACAGCACCAAGAATGGAGTTTACAAGGAAGGATGTGGGCTTGACAGTGTCTTAA TGTCATGGGGCCATGACGACTATATGTACTTGGTGGCCAAGGAAAACAAGACCACTCTGCCTTCAGCTGCATTGTTTATCGTCAGATACCACTCTTTCTA TCCTCTGCACAAGCATGGTGCATACAAGCAGCTGATGAACAAGCAGGACCAGGAAGATATCAAGTGGCTCCATGTCTTTAACAAATATGATCTATACAGC AAGAGCAAGGTCCATGTAGATGTTGATGCAGTGAAGCCATACTACCAATCCCTCATTGCAAAATACTTCCCAGAGAAACTGAGATGGTAA
AA sequence Show only first row Show all	>Lus10035005 pacid=23181438 polypeptide=Lus10035005 locus=Lus10035005.g ID=Lus10035005.BGIv1.0 annot-version=v1.0 MTIRIEQPADSANTATSLLEVGNEKNKNKLVGEEKEELVLDCGFVVPEKPIVSSNEFEAPDINAFGNSFRNYYAENERQKAVENLYRQQHCTQTYDFVKK MREEYGKLDKGEMSIWECCELLNSVVDESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKILLLPQFGELAQWAVVGDTYPLGCAFDPSNV HHKYFAENPDTKNPAYSTKNGVYKEGCGLDSVLMSWGHDDYMYLVAKENKTTLPSAALFIVRYHSFYPLHKHGAYKQLMNKQDQEDIKWLHVFNKYDLYS KSKVHVDVDAVKPYYQSLIAKYFPEKLRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10035005 [exp]	0	1
AT3G02555			unknown protein		Lus10027224 [exp]	3.9	0.8578
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Lus10006198 [exp]	4.7	0.7798
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	11.2	0.7764
AT1G68490			unknown protein		Lus10038934 [exp]	11.5	0.8362
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10009277 [exp]	12.1	0.8490
AT1G44790			ChaC-like family protein (.1)		Lus10028029 [exp]	19.7	0.8153
AT5G38900			Thioredoxin superfamily protei...		Lus10005082 [exp]	35.1	0.8157
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	45.5	0.8021
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	57.7	0.7771
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Lus10019292 [exp]	72.5	0.7799

Compare expression of checked genes

Lus10035005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.