Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19810 362 / 3e-124 C3HZnF AtOZF1 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) AT4G29190 340 / 2e-115 C3HZnF AtOZF2 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G25900 262 / 2e-85 C3HZnF ATTZF1, ATCTH A. THALIANA TANDEM ZINC FINGER PROTEIN 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT1G03790 199 / 3e-60 C3HZnF SOM SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G44260 199 / 4e-60 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G41900 197 / 6e-57 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G58620 192 / 1e-55 C3HZnF zinc finger (CCCH-type) family protein (.1) AT5G12850 191 / 1e-54 C3HZnF PEI1 CCCH-type zinc finger protein with ARM repeat domain (.1) AT5G07500 175 / 1e-52 C3HZnF PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G40140 175 / 3e-49 C3HZnF ATSZF2, CZF1, ZFAR1 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012922 [exp] 663 / 0 AT2G19810 387 / 9e-134 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Lus10033665 [exp] 201 / 6e-62 AT1G03790 240 / 6e-77 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10017708 [exp] 201 / 7e-62 AT1G03790 252 / 7e-82 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10018621 [exp] 193 / 2e-58 AT1G03790 245 / 3e-78 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10019709 [exp] 197 / 3e-56 AT2G41900 759 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Lus10007493 [exp] 184 / 2e-52 AT2G40140 614 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10028970 [exp] 184 / 2e-52 AT2G40140 615 / 0.0 \(SALT-INDUCIBLE ZINC FINGER 2, zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10040662 [exp] 173 / 3e-50 AT5G58620 341 / 2e-112 zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234300 [exp] 340 / 6e-115 AT4G29190 306 / 4e-102 Arabidopsis thaliana oxidation-related zinc finger 2, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G058600 [exp] 333 / 2e-112 AT2G19810 314 / 4e-105 Oxidation-related Zinc Finger 1, CCCH-type zinc finger family protein (.1) Potri.017G013400 [exp] 224 / 7e-70 AT1G03790 265 / 2e-85 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G138300 [exp] 218 / 3e-67 AT1G03790 233 / 2e-73 SOMNUS, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.016G053700 [exp] 204 / 4e-59 AT2G41900 820 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053800 [exp] 203 / 6e-59 AT2G41900 817 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.006G053900 [exp] 199 / 9e-58 AT2G41900 791 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G266700 [exp] 197 / 6e-57 AT2G41900 708 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1) Potri.001G252600 [exp] 194 / 1e-55 AT5G58620 572 / 0.0 zinc finger (CCCH-type) family protein (.1) Potri.009G061000 [exp] 193 / 3e-55 AT2G41900 672 / 0.0 OXIDATIVE STRESS 2, CCCH-type zinc finger protein with ARM repeat domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10035006 pacid=23181416 polypeptide=Lus10035006 locus=Lus10035006.g ID=Lus10035006.BGIv1.0 annot-version=v1.0 ATGATGCTTGGCGAACAACACCGTCTCAATCATTCCGTACACGTTCCCCCTTGGGACGATCAGAGCCATGATAATTTGTTCAGCCCTGGCAATGGTGACT CTTCTGATTACAATTCCTTTTACATCCCGGAAGCTCTATCGGCGCTGCAGAGGTTCCTACCATCTAATGACTCGGATTTCGACCAAGTGTTCGATATTCC GGGTCTGGACCATGACTCTCCCATCGACGCTTACTCCTGCGATCAATTCAGGATGTACGAGTTCAAGGTAAGGCGATGCGCACGTGGCAGGTCCCACGAC TGGACTGAGTGTCCGTACGCGCACCCGGGAGAGAAGGCTCGTCGGAGGGATCCGAGGAAGTTTCATTACTCCGGCACTGCTTGCCCCGAGTTCCGCAAAG GGAGTTGCAAGAAGGGCGACAGCTGCGAGTTCGCCCACGGCGTATTCGAGTGCTGGCTACACCCTGCTCGCTATCGTACGCAGCCCTGCAAGGACGGTAC GAACTGCAAGCGCAGGGTCTGCTTCTTCGCCCACACGCCGGAGCAACTCAGGGTCCTACCGCAGAGCCCCCGGAGCGTCAACTCTGCTGACTCCTACGAC GGATCTCCTCTCCGCCAGGCGATCGAGGCTTCCTGCGTCCGGAATCTTCCTTTCTTGGCATCGTCAAACTCGCCAGGATCTATCACGCCTCCCGAGGTCG ACTCGCCTCCGATGTCTTCGATTTTGAGTCGCTCCCTGGGATCCAACTCGGTCAACGAAATGGTGGCTTCTTTACGGAACCTCCAGATTGGTAAGATGCC ATCCTTGCCTTGGTCTTGGAATGTGCAGGTGGGTGGAGGTTGCAGCGGCGGAGGATCTGTTTACGGATCCCCGCGGGCCGGATCGATCCTTAGACCCGAA TTCTACAGTGTGCCCACCACTCCGACCCGAACCCCAAGCTGGCTCCGCTACTCTGATTTCTGGGACAAAGTCTGCGAGGAGGAGCCGGCGATGGAAAGGG TGGAATCCGGTAGAGATATCAGGGCGAGGATGTTTGAGAGGCTTAGCAAGGAGAACAATATGCTGGAGCTGGTTGACCCAGGTATGGGCCCAACTTCCGG CGGTCCGGATGTCGATTGGGTTTCCGATCTGGTTCAGTGA
AA sequence Show only first row Show all	>Lus10035006 pacid=23181416 polypeptide=Lus10035006 locus=Lus10035006.g ID=Lus10035006.BGIv1.0 annot-version=v1.0 MMLGEQHRLNHSVHVPPWDDQSHDNLFSPGNGDSSDYNSFYIPEALSALQRFLPSNDSDFDQVFDIPGLDHDSPIDAYSCDQFRMYEFKVRRCARGRSHD WTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCKRRVCFFAHTPEQLRVLPQSPRSVNSADSYD GSPLRQAIEASCVRNLPFLASSNSPGSITPPEVDSPPMSSILSRSLGSNSVNEMVASLRNLQIGKMPSLPWSWNVQVGGGCSGGGSVYGSPRAGSILRPE FYSVPTTPTRTPSWLRYSDFWDKVCEEEPAMERVESGRDIRARMFERLSKENNMLELVDPGMGPTSGGPDVDWVSDLVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10035006 [exp]	0	1
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	5.8	0.8192
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	11.7	0.7973
AT5G17980			C2 calcium/lipid-binding plant...		Lus10010658 [exp]	13.2	0.7932
AT1G20225			Thioredoxin superfamily protei...		Lus10021843 [exp]	16.0	0.7171
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	18.4	0.7929
AT3G22440			FRIGIDA-like protein (.1)		Lus10010560 [exp]	18.7	0.7916
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	20.1	0.7918
AT2G30933			Carbohydrate-binding X8 domain...		Lus10031443 [exp]	20.2	0.7546
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	20.5	0.7881
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	21.4	0.7731

Compare expression of checked genes

Lus10035006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.