Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18790 139 / 2e-39 AtRKD1, RKD1 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) AT5G66990 139 / 3e-39 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1) AT1G74480 129 / 2e-35 AtRKD2, RKD2 RWP-RK domain containing 2, RWP-RK domain-containing protein (.1) AT5G53040 115 / 3e-30 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) AT4G35590 79 / 2e-16 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1) AT4G10270 74 / 2e-16 Wound-responsive family protein (.1) AT4G10265 67 / 4e-14 Wound-responsive family protein (.1) AT4G24020 47 / 8e-06 NLP7 NIN like protein 7 (.1) AT1G76350 47 / 9e-06 NLP5 Plant regulator RWP-RK family protein (.1) AT1G20640 47 / 9e-06 NLP4 Plant regulator RWP-RK family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034456 [exp] 154 / 3e-44 AT1G18790 157 / 9e-46 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10019100 [exp] 149 / 1e-42 AT1G18790 149 / 2e-43 RWP-RK domain containing 1, RWP-RK domain-containing protein (.1) Lus10033729 [exp] 100 / 1e-26 AT4G10270 94 / 8e-27 Wound-responsive family protein (.1) Lus10005921 [exp] 105 / 3e-26 AT5G53040 143 / 2e-41 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Lus10031616 [exp] 96 / 7e-25 AT4G10270 76 / 7e-20 Wound-responsive family protein (.1) Lus10039755 [exp] 77 / 1e-17 AT4G10265 115 / 2e-35 Wound-responsive family protein (.1) Lus10018530 [exp] 76 / 2e-17 AT4G10270 119 / 8e-37 Wound-responsive family protein (.1) Lus10039751 [exp] 76 / 2e-17 AT4G10265 113 / 1e-34 Wound-responsive family protein (.1) Lus10039752 [exp] 76 / 3e-17 AT4G10270 120 / 4e-37 Wound-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G016800 [exp] 117 / 3e-31 AT5G53040 138 / 8e-40 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.015G011800 [exp] 114 / 3e-30 AT5G53040 137 / 1e-39 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1) Potri.013G148100 [exp] 85 / 9e-21 AT4G10270 103 / 1e-30 Wound-responsive family protein (.1) Potri.019G117632 [exp] 82 / 9e-20 AT4G10270 98 / 3e-28 Wound-responsive family protein (.1) Potri.019G117500 [exp] 82 / 1e-19 AT4G10270 97 / 5e-28 Wound-responsive family protein (.1) Potri.019G117402 [exp] 82 / 1e-19 AT4G10270 97 / 5e-28 Wound-responsive family protein (.1) Potri.019G116500 [exp] 82 / 1e-19 AT4G10270 107 / 4e-32 Wound-responsive family protein (.1) Potri.013G148000 [exp] 81 / 3e-19 AT4G10270 101 / 7e-30 Wound-responsive family protein (.1) Potri.019G117201 [exp] 78 / 2e-18 AT4G10270 82 / 5e-22 Wound-responsive family protein (.1) Potri.019G116866 [exp] 78 / 4e-18 AT4G10270 80 / 3e-21 Wound-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain PF12609 [flax] [poplar] DUF3774 Wound-induced protein
Representative CDS sequence Show only first row Show all	>Lus10035008 pacid=23162348 polypeptide=Lus10035008 locus=Lus10035008.g ID=Lus10035008.BGIv1.0 annot-version=v1.0 ATGAGCTCAACGAGCAGAGCTTGGACGGCAGCAGTTGTAGTGGGAGCAGTAGAGGCTCTGAGAGACCAAGGGTTTTGTAGATGGAATCACGCCATCCGAT CGATCCACCAAATCTCCGAGAACAAGATCAGGTCGTCATCAGTTTCCCGGCAAGCCAAGCAAGCCGGGCAAATCCGTAGGATTGTGGAAGAAGAACAGAG TGGAAACAGAGCAGAGGAGTCTCTCAAGACTGTTATCGACATCACTTCTTACGGAGAAGATGGAAATCAGTTGTTATTCCAAGAACCCAACGGCTACTGT TACTACGGCGACAATAGTGTCTTTCAATCGACTTACGGGCTCATCTCTTTTGACGATGCTGCTGATCCAGAGGTCGACGCTTCGATCTGGAACGAATTGG AACCTCTGCTTCCGTCGAGGGAGAATCGGCCTGTCGACGTGGAGGAGATGAAAGCAGCAGCAGCTGCTACTACTGATGTTTCGTCTGCTGCGAATCATCT GACGAAGGAGGTGGTGGCGAGGTATTTCCACATGCCGATTACTCAAGCGGCGAAGGAGATGAATGTGGGGCTGACTCTGCTGAAAAAGCGATGCAGGGAG ATCGGAGTGAAGAGGTGGCCTCACCGGAAGTTGAAGAGCCTGCGGAATTTGATAGCGAATGTTAAGCAGCTTGCGGCGGAGGTTGAGGAGGAGGAAGGAG GGAGCGAGGACGGTGGTCGGGCGAAATTGGAGGAGGCGATTCGAGAACTGGAGAATGAGCGGAAGGTGCTCGACGAAAGTCCTGACTTGCGACTTGGGCC CAGGACTATGAGGCTTAGGCAGGCTTGTTTCAAGGCCACTTATAAAAGGAAGCGCAAGATGAACCGCCTTCTTCATCCTTCTTCCAATTGA
AA sequence Show only first row Show all	>Lus10035008 pacid=23162348 polypeptide=Lus10035008 locus=Lus10035008.g ID=Lus10035008.BGIv1.0 annot-version=v1.0 MSSTSRAWTAAVVVGAVEALRDQGFCRWNHAIRSIHQISENKIRSSSVSRQAKQAGQIRRIVEEEQSGNRAEESLKTVIDITSYGEDGNQLLFQEPNGYC YYGDNSVFQSTYGLISFDDAADPEVDASIWNELEPLLPSRENRPVDVEEMKAAAAATTDVSSAANHLTKEVVARYFHMPITQAAKEMNVGLTLLKKRCRE IGVKRWPHRKLKSLRNLIANVKQLAAEVEEEEGGSEDGGRAKLEEAIRELENERKVLDESPDLRLGPRTMRLRQACFKATYKRKRKMNRLLHPSSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	0	1
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013495 [exp]	2.4	0.7270
AT1G73210			Protein of unknown function (D...		Lus10036189 [exp]	7.4	0.7326
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10043093 [exp]	10.2	0.6954
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	12.4	0.7149
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	28.5	0.6773
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	30.0	0.6710
AT5G14230			unknown protein		Lus10015811 [exp]	33.4	0.6487
AT1G13970			Protein of unknown function (D...		Lus10030425 [exp]	36.2	0.6727
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10027627 [exp]	36.3	0.6534
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	36.6	0.6486

Compare expression of checked genes

Lus10035008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.