Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47550 219 / 2e-70 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT2G02960 204 / 1e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT5G62460 205 / 2e-64 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 177 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G01275 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 98 / 5e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 86 / 8e-20 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 79 / 3e-17 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 54 / 8e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 52 / 2e-07 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021670 [exp] 452 / 7e-162 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 333 / 3e-115 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10019102 [exp] 330 / 7e-114 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10036754 [exp] 229 / 2e-74 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10012826 [exp] 222 / 2e-71 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10037172 [exp] 217 / 2e-69 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10030472 [exp] 178 / 6e-54 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10004058 [exp] 133 / 3e-37 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 132 / 6e-37 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169200 [exp] 242 / 2e-79 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 237 / 2e-77 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.004G093500 [exp] 132 / 7e-37 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 131 / 1e-36 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 128 / 2e-35 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G111700 [exp] 127 / 6e-35 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 125 / 3e-34 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.017G122300 [exp] 118 / 7e-32 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G121900 [exp] 87 / 4e-20 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 79 / 3e-17 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10035010 pacid=23162445 polypeptide=Lus10035010 locus=Lus10035010.g ID=Lus10035010.BGIv1.0 annot-version=v1.0 ATGAGTGACCATCTAGATTCGGGTGTTGACCGGAATATAGCACCTGAAAATTCACAACCAATACATGGTGCTGAGCTTCCAAAATCTGGAGAGTGTTCTT CTATTCAACCTGTTAATGACCTGGCTAGCTTAAACGACAATGAGAAACTGGCAGAACATGATTTATGCGACGAAAATGAGCCGTTTATTCAGACGGTGGA ATGCAGAATTTGTCAGGAGGAAGATAGCCTGATGAATTTGGAGACCCCATGTGCTTGTAGTGGTAGTTTGAAGTATGTTCATAGAAAGTGTGTTCAGCGA TGGTGTAATGAAAAGGGAGATGTCATTTGTGAGATATGCCGCAAGCCTTACCAACCTGGATATACTGCCCCTCCACCACCTCCTCAACCAGAGGACACTG CTATTGATATAGGTGAAGGTTGGACTCTTGCTGGCACTCCTTTGGATTTGCATGATCCCCGAATTTTGGCAATGGCTGCTGCTGAACGCCATCTTCTAGA GGCGGAATACGATGAGTATGGCGATGGTAGTGCTAATGGGGCTTCATTTTGTCGCTCTGCTGCTGTAATTCTAATGGCTCTTTTGCTCTGGAGGCATGTT ATCACCCTCAACAATTCGGATGCTGATGATGACGCTTCTACGTTTTTCTCACTTTTCATGCTTAGAGCTGCTGTGTTTCTTCTACCGTGCTATCTCATGG CTTGGGCAATCAGTCTTCTGCAACGTAGGCGAGAAAGGCAGGAAGCAGCAGCAGCTCTAGCAGCATCAGAGGTAACCTTCATGATACAGGCAGGCCAACA AGGAAGTTTGCATTTCAGTGTCGCCCCTGGTCCTGCCATAACTCCTCAACCAGCAGTGGTGCAGCCACACCTTCCTGTGTAA
AA sequence Show only first row Show all	>Lus10035010 pacid=23162445 polypeptide=Lus10035010 locus=Lus10035010.g ID=Lus10035010.BGIv1.0 annot-version=v1.0 MSDHLDSGVDRNIAPENSQPIHGAELPKSGECSSIQPVNDLASLNDNEKLAEHDLCDENEPFIQTVECRICQEEDSLMNLETPCACSGSLKYVHRKCVQR WCNEKGDVICEICRKPYQPGYTAPPPPPQPEDTAIDIGEGWTLAGTPLDLHDPRILAMAAAERHLLEAEYDEYGDGSANGASFCRSAAVILMALLLWRHV ITLNNSDADDDASTFFSLFMLRAAVFLLPCYLMAWAISLLQRRRERQEAAAALAASEVTFMIQAGQQGSLHFSVAPGPAITPQPAVVQPHLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	0	1
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	5.9	0.8057
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	8.3	0.8205
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10007933 [exp]	9.5	0.7881
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	12.7	0.8028
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	12.7	0.8259
					Lus10037253 [exp]	12.7	0.8219
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10019097 [exp]	13.4	0.7662
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Lus10033937 [exp]	13.4	0.8176
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	14.4	0.8041
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	19.3	0.8078

Compare expression of checked genes

Lus10035010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.