Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 755 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT2G40890 228 / 2e-68 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G22710 205 / 1e-59 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G26280 203 / 4e-59 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT4G22690 204 / 8e-59 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT3G48280 199 / 2e-57 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G07990 195 / 8e-56 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G13770 194 / 9e-56 REF2, CYP83A1 REDUCED EPIDERMAL FLUORESCENCE 2, "cytochrome P450, family 83, subfamily A, polypeptide 1", cytochrome P450, family 83, subfamily A, polypeptide 1 (.1) AT3G26230 194 / 1e-55 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT3G48290 192 / 4e-55 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034449 [exp] 828 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10021671 [exp] 771 / 0 AT2G30490 778 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 590 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 512 / 0 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10020847 [exp] 218 / 1e-64 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 218 / 2e-64 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 212 / 3e-62 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 211 / 5e-62 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10017961 [exp] 199 / 4e-57 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G157900 [exp] 804 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.019G130700 [exp] 782 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 597 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.006G033300 [exp] 216 / 4e-64 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 213 / 2e-62 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 210 / 2e-61 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.007G083500 [exp] 204 / 2e-59 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G082900 [exp] 204 / 2e-59 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.015G086000 [exp] 200 / 5e-58 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.007G084800 [exp] 200 / 5e-58 AT3G26300 380 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10035011 pacid=23162466 polypeptide=Lus10035011 locus=Lus10035011.g ID=Lus10035011.BGIv1.0 annot-version=v1.0 ATGGATCTCCTCCTCCTGGAGAAGACCTTGCTGGCCTTATTCTCCGCCGTTGTCGTCGCCATTGTAATATCTAAGCTCCGCGGCAAGCGATTCAAGCTCC CTCCCGGCCCATTCCCTGTCCCAATCTTTGGCAATTGGCTCCAAGTCGGCGATGACCTCAACCACCGCAACCTAACCGACCTCGCCAAAAAATTCGGCGA GATCTTCCTCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTATCCTCCCCTGACCTCGCCAAGGAGGTCCTCCACACACAGGGCGTCGAGTTCGGCTCC CGGACTCGCAACGTAGTCTTCGACATCTTCACCGGGAAGGGACAGGATATGGTGTTCACCGTCTACGGCGAGCACTGGAGGAAGATGCGCCGGATCATGA CCGTCCCGTTCTTCACCAACAAGGTCGTCCAGCAGAATCGCCAGGGGTGGGAGGCAGACCTCCAGCAGACCCGCCAGGGGTGGGAGGCAGAGGCCGCCGC CGTGGTGGAGGACGTCAAGAAGGATCCGAAAGCCGCCGCTGGCGGAATCGTGCTCCGACGCAGGCTCCAGCTGATGATGTACAACAACATTTTCCGCATC ATGTTCGACCGACGATTCGATTCGATGGAGGATCCGTTGTTTAATAAGCTCAAGGCGTTGAACGGAGAGCGGAGTCGGTTGGCTCAGAGCTTCGAATACA ACTATGGAGATTTCATCCCGATTTTGAGGCCGTTTTTGAGAGGCTATTTGAAGGTGTGCAAGGATGTCAAGGATAGGAGACTGCAGCTCTTCAAGGATTA CTTCATTGCAGATAGGAAGAAAGCGGTGAGCACGAAGGGAGAGATGAGTTGTGCGATGGATCATATCATGGATGCGCAGCAGAAGGGAGAAATCAACGAA GACAACGTCCTCTACATCGTCGAGAACATCAACGTCGCCGCCATTGAGACCACGTTGTGGTCAATCGAGTGGGGGATCGCAGAGCTAGTCAACCATCCAG AGATTCAGCAAAAGCTGAGGGAAGAACTGGACACAGTGTTGGGACCGGGTAACCAGGTGACCGAGCCCGACATACAGAAGCTACCATACCTCCAGGCGGT GGTCAAGGAAACCCTCCGTCTAAGAATGGCAATCCCTCTGCTGGTCCCGCACATGAACCTCCACGATGCTAAGCTCCGTGGATTCGACATCCCTGCAGAG AGCAAGATACTGGTGAACGCGTGGTGGCTGGCGAACAACCCTGAGCAATGGAAGAAACCCGAGGAGTTCAGGCCGGAGAGGTTCCTCGAGGAGGAGGCCA AGGTGGAGGCCAATGGAAACGACTTTAGGTACCTTCCGTTCGGAGTTGGGAGGAGGAGTTGCCCTGGGATCATCCTTGCCCTGCCCATTTTGGGGATTAC CATCGGGCGTTTGGTGCAAAACTTCGAGCTGTTGCCTCCTCCTGGACAGTCAAAGCTTGATACTAGTGAGAAAGGTGGACAGTTCAGCTTGCATATCTTG AAGCATTCCACTATTGTTGCTAAGCCAAGGTCGGTTTAA
AA sequence Show only first row Show all	>Lus10035011 pacid=23162466 polypeptide=Lus10035011 locus=Lus10035011.g ID=Lus10035011.BGIv1.0 annot-version=v1.0 MDLLLLEKTLLALFSAVVVAIVISKLRGKRFKLPPGPFPVPIFGNWLQVGDDLNHRNLTDLAKKFGEIFLLRMGQRNLVVVSSPDLAKEVLHTQGVEFGS RTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRQGWEADLQQTRQGWEAEAAAVVEDVKKDPKAAAGGIVLRRRLQLMMYNNIFRI MFDRRFDSMEDPLFNKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKVCKDVKDRRLQLFKDYFIADRKKAVSTKGEMSCAMDHIMDAQQKGEINE DNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKLREELDTVLGPGNQVTEPDIQKLPYLQAVVKETLRLRMAIPLLVPHMNLHDAKLRGFDIPAE SKILVNAWWLANNPEQWKKPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHIL KHSTIVAKPRSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	0	1
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10034449 [exp]	1.4	0.9782
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10002321 [exp]	2.0	0.9754
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	2.4	0.9780
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10040416 [exp]	2.4	0.9780
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10023531 [exp]	3.2	0.9667
AT5G12300			Calcium-dependent lipid-bindin...		Lus10009693 [exp]	5.9	0.9308
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10026097 [exp]	6.9	0.9660
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10009396 [exp]	7.0	0.9636
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005950 [exp]	7.7	0.9526
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005189 [exp]	8.0	0.9316

Compare expression of checked genes

Lus10035011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.