Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58300 761 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 617 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 578 / 0 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT4G23740 497 / 6e-169 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 421 / 4e-139 RKL1 receptor-like kinase 1 (.1) AT2G26730 409 / 2e-134 Leucine-rich repeat protein kinase family protein (.1) AT3G02880 400 / 3e-131 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 396 / 4e-130 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 389 / 3e-127 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT2G36570 382 / 4e-124 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021673 [exp] 1073 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 912 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 911 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 556 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029005 [exp] 513 / 6e-174 AT5G58300 612 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 426 / 2e-141 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10025210 [exp] 403 / 4e-132 AT3G08680 669 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021383 [exp] 403 / 5e-132 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033936 [exp] 389 / 2e-127 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G131500 [exp] 861 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 855 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 734 / 0 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 726 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 578 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 528 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 440 / 7e-147 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 439 / 1e-146 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 400 / 3e-131 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 392 / 5e-128 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035012 pacid=23162534 polypeptide=Lus10035012 locus=Lus10035012.g ID=Lus10035012.BGIv1.0 annot-version=v1.0 ATGAACCTACACCAAGTGGATTCATCCATGAAGCTCATCCGGGTTCCATTCCTGCATTTCTTGTTTGTTCTGATCACCTTGCATTCTCTAGTTGTAGCGG ACTTGAACTCAGATAGGCAGGCTCTTCTCGGCTTTTCGGCAGCAGTACCACATTATCGTTTCTTGAACTGGACTTCTGCCTCTTCAACTTGTGATTCATG GGTGGGTGTTACTTGCAACTCGGACGGTTCTCGGGTGGTTGCACTCCGACTCCCTGGAGTTGGACTTGTGGGACCAATACCTTCCAATACTCTAGGTCAA CTTGATGCCCTGAGGGTTCTCAGCCTTCGTTCTAATGCTCTTACTGGTGATCTTCCAGCAGATGTTTCCTCCCTTCCCTCTCTTCGCTCCCTGTTCCTTC AACACAATAGCTTGAATGGTAACATACCTACCTCCCTTTCCTCACAACTCAACATATTAGATCTCTCATTCAATAATTTCACAGGCAACATTCCCCAAAC ATTGTCAAATTTGACACAGCTCACTATCTTAAACCTCCAAAACAACACGCTCTATGGAGCTATACCAGACCTGAACCGTACTAAACTCAGACATTTGAAT TTGAGTAGTAACCATTTGAATGGTTCGATTCCTTCCTCTCTTCAAAGTTTCCCCAATTCTTCCTTTGCCGGAAACTCTCTATTATGTGGTTTACCTCTTG ATCCCTGCTCTCCTGTCCCTCTTGCGCCATCACCATCACCATCTCCTCCGAATGCTCCTCCTCCAGCAATCGCTCCTCCTCACAAGAAAAGTTCGAAACT GAGACTGACAAAAGGACCGATCATTGCCATTGCAGTAGGAGGATTTGCAGTGCTGGTTCTCCTTGCTTTGATTGTTATATGCTGCTGTTTGAAGAAGAAA GACAATGGTAGTAGCAGTGATTTGAAGGGGAAAGCCGTTGCTGGTGGTGGCAGGGGTGACAAACCAAAAGAGGAATTTGGAAGTGGAGTGCAAACATCCG AAAAGAACAAATTGGTGTTCTTTGAAGGTTGCTCCTACAATTTCGATCTCGAGGATCTATTGAGGGCTTCAGCAGAAGTGTTGGGGAAAGGTAGTTATGG CACTGCCTATAAGGCTGTGTTGGAAGAAGCTACAACAGTGGTAGTGAAGAGGTTGAAAGAAGTGGTAGTAGGGAAGAAGGAGTTCGAACAGCAAATGGAG ATCGTTGGAAGAGTCGGTCAGCATCCAAATGTTGTTCCACTCCGTGCATACTATTACTCAAAGGACGAAAAGCTCCTCGTATATGACTATATTCCGGCTG GCAGCTTGTGCACGCTTTTGCATGGAAACAGGGGAGTTGGGAGGACGCCACTAGACTGGGAAAGCAGGATAAAGATAGCACTTAGCACAGCAAAAGGAAT TGCTCACCTGCACTCTGCAGGGGGGCCGAAATTCAACCATGGAAACATCAAGACTTCAAATGTGCTGATGAACTCCGACAATGAAGGGTGCATTTCCGAT TTCGGGTTAGCGCCTCTGATGAATACCCCCTTGAGTCCCTCTCGAACTGTGGGGTACAGTGCTCCGGAGGTGATCGAAACACGTAAGCACAGCCACAAAT CAGACGTGTACAGCTTTGGAGTGCTAATCCTGGAGATGCTGACGGGGAAAGCTCCGATGCAGTCCCCTGGACGAGGGGATGACATGGTGGATCTTCCCAG GTGGGTGCAGTCAGTGGTGAGGGAGGAATGGACGGCAGAGGTATTTGACGTGGAGCTGATGAGGTATCAGAACATCGAAGAGGAAATGGTGCAGATGCTG CAGATTGGCATGGCCTGCGTAGCTAAGGTGCCGGATATGAGACCGAACATGGAAGAAGTGGTTAGAATGATCGAGGAAATCCGGCAGTCGGAGTCAGAGA ACAGGCTGTCGTCTGAAGATAACAAATCCAATGTGCAGACTCCTTGA
AA sequence Show only first row Show all	>Lus10035012 pacid=23162534 polypeptide=Lus10035012 locus=Lus10035012.g ID=Lus10035012.BGIv1.0 annot-version=v1.0 MNLHQVDSSMKLIRVPFLHFLFVLITLHSLVVADLNSDRQALLGFSAAVPHYRFLNWTSASSTCDSWVGVTCNSDGSRVVALRLPGVGLVGPIPSNTLGQ LDALRVLSLRSNALTGDLPADVSSLPSLRSLFLQHNSLNGNIPTSLSSQLNILDLSFNNFTGNIPQTLSNLTQLTILNLQNNTLYGAIPDLNRTKLRHLN LSSNHLNGSIPSSLQSFPNSSFAGNSLLCGLPLDPCSPVPLAPSPSPSPPNAPPPAIAPPHKKSSKLRLTKGPIIAIAVGGFAVLVLLALIVICCCLKKK DNGSSSDLKGKAVAGGGRGDKPKEEFGSGVQTSEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAVLEEATTVVVKRLKEVVVGKKEFEQQME IVGRVGQHPNVVPLRAYYYSKDEKLLVYDYIPAGSLCTLLHGNRGVGRTPLDWESRIKIALSTAKGIAHLHSAGGPKFNHGNIKTSNVLMNSDNEGCISD FGLAPLMNTPLSPSRTVGYSAPEVIETRKHSHKSDVYSFGVLILEMLTGKAPMQSPGRGDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQML QIGMACVAKVPDMRPNMEEVVRMIEEIRQSESENRLSSEDNKSNVQTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	0	1
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	3.5	0.9171
AT5G55970			RING/U-box superfamily protein...		Lus10022567 [exp]	8.0	0.9227
AT5G14550			Core-2/I-branching beta-1,6-N-...		Lus10008770 [exp]	9.4	0.8814
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	10.6	0.8917
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10020316 [exp]	11.7	0.9039
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	12.4	0.8866
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	16.2	0.8884
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	17.9	0.8657
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	18.0	0.8881
AT3G03690		UNE7	unfertilized embryo sac 7, Cor...		Lus10005676 [exp]	18.2	0.8944

Compare expression of checked genes

Lus10035012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.